Gene : Seita.9G467300 S. italica v2.2
Defline:  (1 of 1) KOG4519 - Phosphomevalonate kinase Genomic Order:  4673
Name:  ? Seita.9G467300 Secondary Identifier:  ? PAC:32686683
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5910 Setaria italica pathologic  
Sitalica PWY-922 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G467300 0.5kb upstream 0.5kb upstream 5030 true scaffold_9: 51085739-51090768 Setaria italica
Seita.9G467300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51085739-51086238 Setaria italica
Seita.9G467300 0.5kb downstream 0.5kb downstream 5030 true scaffold_9: 51086239-51091268 Setaria italica
Seita.9G467300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51090769-51091268 Setaria italica
Seita.9G467300 1.0kb upstream 1.0kb upstream 5530 true scaffold_9: 51085239-51090768 Setaria italica
Seita.9G467300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51085239-51086238 Setaria italica
Seita.9G467300 1.0kb downstream 1.0kb downstream 5530 true scaffold_9: 51086239-51091768 Setaria italica
Seita.9G467300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51090769-51091768 Setaria italica
Seita.9G467300 2.0kb upstream 2.0kb upstream 6530 true scaffold_9: 51084239-51090768 Setaria italica
Seita.9G467300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51084239-51086238 Setaria italica
Seita.9G467300 2.0kb downstream 2.0kb downstream 6530 true scaffold_9: 51086239-51092768 Setaria italica
Seita.9G467300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51090769-51092768 Setaria italica
Seita.9G467300 5.0kb upstream 5.0kb upstream 9530 true scaffold_9: 51081239-51090768 Setaria italica
Seita.9G467300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51081239-51086238 Setaria italica
Seita.9G467300 5.0kb downstream 5.0kb downstream 9530 true scaffold_9: 51086239-51095768 Setaria italica
Seita.9G467300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51090769-51095768 Setaria italica
Seita.9G467300 10.0kb upstream 10.0kb upstream 14530 true scaffold_9: 51076239-51090768 Setaria italica
Seita.9G467300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51076239-51086238 Setaria italica
Seita.9G467300 10.0kb downstream 10.0kb downstream 14530 true scaffold_9: 51086239-51100768 Setaria italica
Seita.9G467300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51090769-51100768 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177761 5267 Panicoideae View MSA
124581023 5269 Grass View MSA
122043495 5273 Angiosperm View MSA
121345412 5274 Embryophyte View MSA
123380212 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.443        
cufflinks 10.593       High
cufflinks 9.777        
cufflinks 9.222        
cufflinks 7.635        
cufflinks 8.294        
cufflinks 7.7        
cufflinks 10.565       High
cufflinks 8.47        
cufflinks 9.294        
cufflinks 9.145        
cufflinks 7.355        
cufflinks 7.646        
cufflinks 7.581        
cufflinks 9.449        
cufflinks 6.461       Low
cufflinks 9.884        
cufflinks 5.194       Low
cufflinks 7.592        
cufflinks 10.115       High

0 Strain