Gene : Seita.9G467700 S. italica v2.2
Defline:  (1 of 2) PTHR13011 - TFIIF-ALPHA Genomic Order:  4677
Name:  ? Seita.9G467700 Secondary Identifier:  ? PAC:32688479
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G467700 0.5kb upstream 0.5kb upstream 4050 true scaffold_9: 51112224-51116273 Setaria italica
Seita.9G467700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51112224-51112723 Setaria italica
Seita.9G467700 0.5kb downstream 0.5kb downstream 4050 true scaffold_9: 51112724-51116773 Setaria italica
Seita.9G467700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51116274-51116773 Setaria italica
Seita.9G467700 1.0kb upstream 1.0kb upstream 4550 true scaffold_9: 51111724-51116273 Setaria italica
Seita.9G467700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51111724-51112723 Setaria italica
Seita.9G467700 1.0kb downstream 1.0kb downstream 4550 true scaffold_9: 51112724-51117273 Setaria italica
Seita.9G467700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51116274-51117273 Setaria italica
Seita.9G467700 2.0kb upstream 2.0kb upstream 5550 true scaffold_9: 51110724-51116273 Setaria italica
Seita.9G467700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51110724-51112723 Setaria italica
Seita.9G467700 2.0kb downstream 2.0kb downstream 5550 true scaffold_9: 51112724-51118273 Setaria italica
Seita.9G467700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51116274-51118273 Setaria italica
Seita.9G467700 5.0kb upstream 5.0kb upstream 8550 true scaffold_9: 51107724-51116273 Setaria italica
Seita.9G467700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51107724-51112723 Setaria italica
Seita.9G467700 5.0kb downstream 5.0kb downstream 8550 true scaffold_9: 51112724-51121273 Setaria italica
Seita.9G467700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51116274-51121273 Setaria italica
Seita.9G467700 10.0kb upstream 10.0kb upstream 13550 true scaffold_9: 51102724-51116273 Setaria italica
Seita.9G467700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51102724-51112723 Setaria italica
Seita.9G467700 10.0kb downstream 10.0kb downstream 13550 true scaffold_9: 51112724-51126273 Setaria italica
Seita.9G467700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51116274-51126273 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194906 5267 Panicoideae View MSA
124571540 5269 Grass View MSA
122042161 5273 Angiosperm View MSA
121347251 5274 Embryophyte View MSA
123426399 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.262        
cufflinks 0.498        
cufflinks 0.099       Low
cufflinks 0.078     Low Low
cufflinks 0.313        
cufflinks 0.628        
cufflinks 0.141        
cufflinks 0.4        
cufflinks 0.865       High
cufflinks 0.501        
cufflinks 0.637        
cufflinks 0.903       High
cufflinks 0.688        
cufflinks 0.11     Low Low
cufflinks 0.701        
cufflinks 0.111       Low
cufflinks 1.194       High
cufflinks 0.403        
cufflinks 0.058     Low Low
cufflinks 0.736        

0 Strain