Gene : Seita.9G474000 S. italica v2.2
Defline:  (1 of 1) PTHR12701:SF20 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIG5 Genomic Order:  4740
Name:  ? Seita.9G474000 Secondary Identifier:  ? PAC:32689622
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G474000 0.5kb upstream 0.5kb upstream 4575 true scaffold_9: 51560263-51564837 Setaria italica
Seita.9G474000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51560263-51560762 Setaria italica
Seita.9G474000 0.5kb downstream 0.5kb downstream 4575 true scaffold_9: 51560763-51565337 Setaria italica
Seita.9G474000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51564838-51565337 Setaria italica
Seita.9G474000 1.0kb upstream 1.0kb upstream 5075 true scaffold_9: 51559763-51564837 Setaria italica
Seita.9G474000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51559763-51560762 Setaria italica
Seita.9G474000 1.0kb downstream 1.0kb downstream 5075 true scaffold_9: 51560763-51565837 Setaria italica
Seita.9G474000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51564838-51565837 Setaria italica
Seita.9G474000 2.0kb upstream 2.0kb upstream 6075 true scaffold_9: 51558763-51564837 Setaria italica
Seita.9G474000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51558763-51560762 Setaria italica
Seita.9G474000 2.0kb downstream 2.0kb downstream 6075 true scaffold_9: 51560763-51566837 Setaria italica
Seita.9G474000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51564838-51566837 Setaria italica
Seita.9G474000 5.0kb upstream 5.0kb upstream 9075 true scaffold_9: 51555763-51564837 Setaria italica
Seita.9G474000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51555763-51560762 Setaria italica
Seita.9G474000 5.0kb downstream 5.0kb downstream 9075 true scaffold_9: 51560763-51569837 Setaria italica
Seita.9G474000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51564838-51569837 Setaria italica
Seita.9G474000 10.0kb upstream 10.0kb upstream 14075 true scaffold_9: 51550763-51564837 Setaria italica
Seita.9G474000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51550763-51560762 Setaria italica
Seita.9G474000 10.0kb downstream 10.0kb downstream 14075 true scaffold_9: 51560763-51574837 Setaria italica
Seita.9G474000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51564838-51574837 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182428 5267 Panicoideae View MSA
124569738 5269 Grass View MSA
122042109 5273 Angiosperm View MSA
121344883 5274 Embryophyte View MSA
123380122 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.696        
cufflinks 9.334        
cufflinks 2.905       Low
cufflinks 3.315       Low
cufflinks 4.409       Low
cufflinks 8.879        
cufflinks 6.606        
cufflinks 10.67       High
cufflinks 8.606        
cufflinks 12.118       High
cufflinks 6.983        
cufflinks 12.056       High
cufflinks 6.506        
cufflinks 8.162        
cufflinks 7.545        
cufflinks 5.264        
cufflinks 8.784        
cufflinks 7.156        
cufflinks 7.484        
cufflinks 9.063        

0 Strain