Gene : Seita.9G478100 S. italica v2.2
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  4781
Name:  ? Seita.9G478100 Secondary Identifier:  ? PAC:32687883
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G478100 0.5kb upstream 0.5kb upstream 3790 true scaffold_9: 51839717-51843506 Setaria italica
Seita.9G478100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51839717-51840216 Setaria italica
Seita.9G478100 0.5kb downstream 0.5kb downstream 3790 true scaffold_9: 51840217-51844006 Setaria italica
Seita.9G478100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51843507-51844006 Setaria italica
Seita.9G478100 1.0kb upstream 1.0kb upstream 4290 true scaffold_9: 51839217-51843506 Setaria italica
Seita.9G478100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51839217-51840216 Setaria italica
Seita.9G478100 1.0kb downstream 1.0kb downstream 4290 true scaffold_9: 51840217-51844506 Setaria italica
Seita.9G478100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51843507-51844506 Setaria italica
Seita.9G478100 2.0kb upstream 2.0kb upstream 5290 true scaffold_9: 51838217-51843506 Setaria italica
Seita.9G478100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51838217-51840216 Setaria italica
Seita.9G478100 2.0kb downstream 2.0kb downstream 5290 true scaffold_9: 51840217-51845506 Setaria italica
Seita.9G478100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51843507-51845506 Setaria italica
Seita.9G478100 5.0kb upstream 5.0kb upstream 8290 true scaffold_9: 51835217-51843506 Setaria italica
Seita.9G478100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51835217-51840216 Setaria italica
Seita.9G478100 5.0kb downstream 5.0kb downstream 8290 true scaffold_9: 51840217-51848506 Setaria italica
Seita.9G478100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51843507-51848506 Setaria italica
Seita.9G478100 10.0kb upstream 10.0kb upstream 13290 true scaffold_9: 51830217-51843506 Setaria italica
Seita.9G478100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51830217-51840216 Setaria italica
Seita.9G478100 10.0kb downstream 10.0kb downstream 13290 true scaffold_9: 51840217-51853506 Setaria italica
Seita.9G478100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51843507-51853506 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193599 5267 Panicoideae View MSA
124586788 5269 Grass View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.161        
cufflinks 0.238        
cufflinks 0.223        
cufflinks 0.241        
cufflinks 0.237        
cufflinks 0.266        
cufflinks 0.125       Low
cufflinks 0.285        
cufflinks 0.229        
cufflinks 0.275     Low  
cufflinks 0.126     Low Low
cufflinks 0.205        
cufflinks 0.174        
cufflinks 0.488       High
cufflinks 0.092     Low Low
cufflinks 0.246        
cufflinks 0.261        
cufflinks 0.402       High
cufflinks 0.181        
cufflinks 0.223        

0 Strain