Gene : Seita.9G405900 S. italica v2.2
Defline:  (1 of 3) PF06592 - Protein of unknown function (DUF1138) (DUF1138) Genomic Order:  4059
Name:  ? Seita.9G405900 Secondary Identifier:  ? PAC:32692172
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G405900 0.5kb upstream 0.5kb upstream 2518 true scaffold_9: 46524475-46526992 Setaria italica
Seita.9G405900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46524475-46524974 Setaria italica
Seita.9G405900 0.5kb downstream 0.5kb downstream 2518 true scaffold_9: 46524975-46527492 Setaria italica
Seita.9G405900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46526993-46527492 Setaria italica
Seita.9G405900 1.0kb upstream 1.0kb upstream 3018 true scaffold_9: 46523975-46526992 Setaria italica
Seita.9G405900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46523975-46524974 Setaria italica
Seita.9G405900 1.0kb downstream 1.0kb downstream 3018 true scaffold_9: 46524975-46527992 Setaria italica
Seita.9G405900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46526993-46527992 Setaria italica
Seita.9G405900 2.0kb upstream 2.0kb upstream 4018 true scaffold_9: 46522975-46526992 Setaria italica
Seita.9G405900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46522975-46524974 Setaria italica
Seita.9G405900 2.0kb downstream 2.0kb downstream 4018 true scaffold_9: 46524975-46528992 Setaria italica
Seita.9G405900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46526993-46528992 Setaria italica
Seita.9G405900 5.0kb upstream 5.0kb upstream 7018 true scaffold_9: 46519975-46526992 Setaria italica
Seita.9G405900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46519975-46524974 Setaria italica
Seita.9G405900 5.0kb downstream 5.0kb downstream 7018 true scaffold_9: 46524975-46531992 Setaria italica
Seita.9G405900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46526993-46531992 Setaria italica
Seita.9G405900 10.0kb upstream 10.0kb upstream 12018 true scaffold_9: 46514975-46526992 Setaria italica
Seita.9G405900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46514975-46524974 Setaria italica
Seita.9G405900 10.0kb downstream 10.0kb downstream 12018 true scaffold_9: 46524975-46536992 Setaria italica
Seita.9G405900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46526993-46536992 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190153 5267 Panicoideae View MSA
124590665 5269 Grass View MSA
122051261 5273 Angiosperm View MSA
121351565 5274 Embryophyte View MSA
123382229 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.039     High  
cufflinks 25.972     High  
cufflinks 13.255     High Low
cufflinks 16.847     High  
cufflinks 17.824     High  
cufflinks 30.474     High  
cufflinks 15.937     High  
cufflinks 36.546     High  
cufflinks 25.971     High  
cufflinks 45.27     High  
cufflinks 23.267     High  
cufflinks 49.185     High High
cufflinks 44.758     High  
cufflinks 21.139     High  
cufflinks 41.631     High  
cufflinks 9.036       Low
cufflinks 73.464     High High
cufflinks 10.62       Low
cufflinks 17.818     High  
cufflinks 57.615     High High

0 Strain