Gene : Seita.9G409300 S. italica v2.2
Defline:  (1 of 1) PTHR14150 - U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 Genomic Order:  4093
Name:  ? Seita.9G409300 Secondary Identifier:  ? PAC:32689815
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G409300 0.5kb upstream 0.5kb upstream 5333 true scaffold_9: 46773877-46779209 Setaria italica
Seita.9G409300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46778710-46779209 Setaria italica
Seita.9G409300 0.5kb downstream 0.5kb downstream 5333 true scaffold_9: 46773377-46778709 Setaria italica
Seita.9G409300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46773377-46773876 Setaria italica
Seita.9G409300 1.0kb upstream 1.0kb upstream 5833 true scaffold_9: 46773877-46779709 Setaria italica
Seita.9G409300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46778710-46779709 Setaria italica
Seita.9G409300 1.0kb downstream 1.0kb downstream 5833 true scaffold_9: 46772877-46778709 Setaria italica
Seita.9G409300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46772877-46773876 Setaria italica
Seita.9G409300 2.0kb upstream 2.0kb upstream 6833 true scaffold_9: 46773877-46780709 Setaria italica
Seita.9G409300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46778710-46780709 Setaria italica
Seita.9G409300 2.0kb downstream 2.0kb downstream 6833 true scaffold_9: 46771877-46778709 Setaria italica
Seita.9G409300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46771877-46773876 Setaria italica
Seita.9G409300 5.0kb upstream 5.0kb upstream 9833 true scaffold_9: 46773877-46783709 Setaria italica
Seita.9G409300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46778710-46783709 Setaria italica
Seita.9G409300 5.0kb downstream 5.0kb downstream 9833 true scaffold_9: 46768877-46778709 Setaria italica
Seita.9G409300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46768877-46773876 Setaria italica
Seita.9G409300 10.0kb upstream 10.0kb upstream 14833 true scaffold_9: 46773877-46788709 Setaria italica
Seita.9G409300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46778710-46788709 Setaria italica
Seita.9G409300 10.0kb downstream 10.0kb downstream 14833 true scaffold_9: 46763877-46778709 Setaria italica
Seita.9G409300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46763877-46773876 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187363 5267 Panicoideae View MSA
124578077 5269 Grass View MSA
122043501 5273 Angiosperm View MSA
121349819 5274 Embryophyte View MSA
123425174 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.377     High  
cufflinks 14.236     High  
cufflinks 9.936        
cufflinks 8.191       Low
cufflinks 9.939        
cufflinks 16.392     High High
cufflinks 10.779        
cufflinks 10.764        
cufflinks 17.1     High High
cufflinks 5.424       Low
cufflinks 13.091        
cufflinks 12.603        
cufflinks 8.604       Low
cufflinks 12.697        
cufflinks 13.969        
cufflinks 10.721        
cufflinks 13.368        
cufflinks 13.864     High  
cufflinks 8.515       Low
cufflinks 11.704        

0 Strain