Gene : Seita.9G410700 S. italica v2.2
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  4107
Name:  ? Seita.9G410700 Secondary Identifier:  ? PAC:32687346
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G410700 0.5kb upstream 0.5kb upstream 4877 true scaffold_9: 46876986-46881862 Setaria italica
Seita.9G410700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46881363-46881862 Setaria italica
Seita.9G410700 0.5kb downstream 0.5kb downstream 4877 true scaffold_9: 46876486-46881362 Setaria italica
Seita.9G410700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46876486-46876985 Setaria italica
Seita.9G410700 1.0kb upstream 1.0kb upstream 5377 true scaffold_9: 46876986-46882362 Setaria italica
Seita.9G410700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46881363-46882362 Setaria italica
Seita.9G410700 1.0kb downstream 1.0kb downstream 5377 true scaffold_9: 46875986-46881362 Setaria italica
Seita.9G410700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46875986-46876985 Setaria italica
Seita.9G410700 2.0kb upstream 2.0kb upstream 6377 true scaffold_9: 46876986-46883362 Setaria italica
Seita.9G410700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46881363-46883362 Setaria italica
Seita.9G410700 2.0kb downstream 2.0kb downstream 6377 true scaffold_9: 46874986-46881362 Setaria italica
Seita.9G410700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46874986-46876985 Setaria italica
Seita.9G410700 5.0kb upstream 5.0kb upstream 9377 true scaffold_9: 46876986-46886362 Setaria italica
Seita.9G410700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46881363-46886362 Setaria italica
Seita.9G410700 5.0kb downstream 5.0kb downstream 9377 true scaffold_9: 46871986-46881362 Setaria italica
Seita.9G410700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46871986-46876985 Setaria italica
Seita.9G410700 10.0kb upstream 10.0kb upstream 14377 true scaffold_9: 46876986-46891362 Setaria italica
Seita.9G410700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46881363-46891362 Setaria italica
Seita.9G410700 10.0kb downstream 10.0kb downstream 14377 true scaffold_9: 46866986-46881362 Setaria italica
Seita.9G410700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46866986-46876985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122184482 5267 Panicoideae View MSA
124575537 5269 Grass View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.607        
cufflinks 8.478        
cufflinks 5.24       Low
cufflinks 5.263       Low
cufflinks 5.376       Low
cufflinks 9.788        
cufflinks 7.046        
cufflinks 7.907        
cufflinks 5.852        
cufflinks 10.696       High
cufflinks 11.627       High
cufflinks 9.792        
cufflinks 8.546        
cufflinks 5.866        
cufflinks 9.844        
cufflinks 4.276       Low
cufflinks 10.25        
cufflinks 7.607        
cufflinks 4.956       Low
cufflinks 11.365       High

0 Strain