Gene : Seita.9G414500 S. italica v2.2
Defline:  (1 of 1) PTHR12858:SF2 - RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOG Genomic Order:  4145
Name:  ? Seita.9G414500 Secondary Identifier:  ? PAC:32689813
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G414500 0.5kb upstream 0.5kb upstream 9985 true scaffold_9: 47188785-47198769 Setaria italica
Seita.9G414500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47198270-47198769 Setaria italica
Seita.9G414500 0.5kb downstream 0.5kb downstream 9985 true scaffold_9: 47188285-47198269 Setaria italica
Seita.9G414500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47188285-47188784 Setaria italica
Seita.9G414500 1.0kb upstream 1.0kb upstream 10485 true scaffold_9: 47188785-47199269 Setaria italica
Seita.9G414500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47198270-47199269 Setaria italica
Seita.9G414500 1.0kb downstream 1.0kb downstream 10485 true scaffold_9: 47187785-47198269 Setaria italica
Seita.9G414500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47187785-47188784 Setaria italica
Seita.9G414500 2.0kb upstream 2.0kb upstream 11485 true scaffold_9: 47188785-47200269 Setaria italica
Seita.9G414500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47198270-47200269 Setaria italica
Seita.9G414500 2.0kb downstream 2.0kb downstream 11485 true scaffold_9: 47186785-47198269 Setaria italica
Seita.9G414500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47186785-47188784 Setaria italica
Seita.9G414500 5.0kb upstream 5.0kb upstream 14485 true scaffold_9: 47188785-47203269 Setaria italica
Seita.9G414500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47198270-47203269 Setaria italica
Seita.9G414500 5.0kb downstream 5.0kb downstream 14485 true scaffold_9: 47183785-47198269 Setaria italica
Seita.9G414500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47183785-47188784 Setaria italica
Seita.9G414500 10.0kb upstream 10.0kb upstream 19485 true scaffold_9: 47188785-47208269 Setaria italica
Seita.9G414500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47198270-47208269 Setaria italica
Seita.9G414500 10.0kb downstream 10.0kb downstream 19485 true scaffold_9: 47178785-47198269 Setaria italica
Seita.9G414500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47178785-47188784 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191501 5267 Panicoideae View MSA
124574767 5269 Grass View MSA
122050261 5273 Angiosperm View MSA
121345125 5274 Embryophyte View MSA
123424272 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.206       High
cufflinks 10.244        
cufflinks 7.933        
cufflinks 6.606        
cufflinks 7.881        
cufflinks 10.463        
cufflinks 7.557        
cufflinks 7.038        
cufflinks 11.116        
cufflinks 4.07       Low
cufflinks 10.798        
cufflinks 8.562        
cufflinks 6.207        
cufflinks 8.826        
cufflinks 10.054        
cufflinks 11.665        
cufflinks 8.554        
cufflinks 18.075     High High
cufflinks 5.045       Low
cufflinks 8.02        

0 Strain