Gene : Seita.9G418200 S. italica v2.2
Defline:  (1 of 2) PTHR10438:SF245 - THIOREDOXIN-LIKE 1-1, CHLOROPLASTIC-RELATED Genomic Order:  4182
Name:  ? Seita.9G418200 Secondary Identifier:  ? PAC:32686987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G418200 0.5kb upstream 0.5kb upstream 2671 true scaffold_9: 47505576-47508246 Setaria italica
Seita.9G418200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47505576-47506075 Setaria italica
Seita.9G418200 0.5kb downstream 0.5kb downstream 2671 true scaffold_9: 47506076-47508746 Setaria italica
Seita.9G418200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47508247-47508746 Setaria italica
Seita.9G418200 1.0kb upstream 1.0kb upstream 3171 true scaffold_9: 47505076-47508246 Setaria italica
Seita.9G418200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47505076-47506075 Setaria italica
Seita.9G418200 1.0kb downstream 1.0kb downstream 3171 true scaffold_9: 47506076-47509246 Setaria italica
Seita.9G418200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47508247-47509246 Setaria italica
Seita.9G418200 2.0kb upstream 2.0kb upstream 4171 true scaffold_9: 47504076-47508246 Setaria italica
Seita.9G418200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47504076-47506075 Setaria italica
Seita.9G418200 2.0kb downstream 2.0kb downstream 4171 true scaffold_9: 47506076-47510246 Setaria italica
Seita.9G418200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47508247-47510246 Setaria italica
Seita.9G418200 5.0kb upstream 5.0kb upstream 7171 true scaffold_9: 47501076-47508246 Setaria italica
Seita.9G418200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47501076-47506075 Setaria italica
Seita.9G418200 5.0kb downstream 5.0kb downstream 7171 true scaffold_9: 47506076-47513246 Setaria italica
Seita.9G418200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47508247-47513246 Setaria italica
Seita.9G418200 10.0kb upstream 10.0kb upstream 12171 true scaffold_9: 47496076-47508246 Setaria italica
Seita.9G418200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47496076-47506075 Setaria italica
Seita.9G418200 10.0kb downstream 10.0kb downstream 12171 true scaffold_9: 47506076-47518246 Setaria italica
Seita.9G418200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47508247-47518246 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190303 5267 Panicoideae View MSA
124580436 5269 Grass View MSA
122048222 5273 Angiosperm View MSA
121347781 5274 Embryophyte View MSA
123427936 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.818     High  
cufflinks 13.617     High  
cufflinks 21.226     High  
cufflinks 30.153     High High
cufflinks 22.101     High  
cufflinks 14.32     High  
cufflinks 19.369     High  
cufflinks 14.472     High  
cufflinks 13.185     High  
cufflinks 16.223     High  
cufflinks 10.64       Low
cufflinks 23.668     High  
cufflinks 23.972     High  
cufflinks 31.979     High High
cufflinks 11.51       Low
cufflinks 31.274     High High
cufflinks 17.048     High  
cufflinks 41.502     High High
cufflinks 28.071     High  
cufflinks 12.988       Low

0 Strain