Gene : Seita.9G422600 S. italica v2.2
Defline:  (1 of 1) PF11347 - Protein of unknown function (DUF3148) (DUF3148) Genomic Order:  4226
Name:  ? Seita.9G422600 Secondary Identifier:  ? PAC:32688675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G422600 0.5kb upstream 0.5kb upstream 1690 true scaffold_9: 47864265-47865954 Setaria italica
Seita.9G422600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47864265-47864764 Setaria italica
Seita.9G422600 0.5kb downstream 0.5kb downstream 1690 true scaffold_9: 47864765-47866454 Setaria italica
Seita.9G422600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47865955-47866454 Setaria italica
Seita.9G422600 1.0kb upstream 1.0kb upstream 2190 true scaffold_9: 47863765-47865954 Setaria italica
Seita.9G422600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47863765-47864764 Setaria italica
Seita.9G422600 1.0kb downstream 1.0kb downstream 2190 true scaffold_9: 47864765-47866954 Setaria italica
Seita.9G422600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47865955-47866954 Setaria italica
Seita.9G422600 2.0kb upstream 2.0kb upstream 3190 true scaffold_9: 47862765-47865954 Setaria italica
Seita.9G422600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47862765-47864764 Setaria italica
Seita.9G422600 2.0kb downstream 2.0kb downstream 3190 true scaffold_9: 47864765-47867954 Setaria italica
Seita.9G422600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47865955-47867954 Setaria italica
Seita.9G422600 5.0kb upstream 5.0kb upstream 6190 true scaffold_9: 47859765-47865954 Setaria italica
Seita.9G422600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47859765-47864764 Setaria italica
Seita.9G422600 5.0kb downstream 5.0kb downstream 6190 true scaffold_9: 47864765-47870954 Setaria italica
Seita.9G422600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47865955-47870954 Setaria italica
Seita.9G422600 10.0kb upstream 10.0kb upstream 11190 true scaffold_9: 47854765-47865954 Setaria italica
Seita.9G422600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47854765-47864764 Setaria italica
Seita.9G422600 10.0kb downstream 10.0kb downstream 11190 true scaffold_9: 47864765-47875954 Setaria italica
Seita.9G422600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47865955-47875954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191220 5267 Panicoideae View MSA
124573718 5269 Grass View MSA
122044636 5273 Angiosperm View MSA
121348938 5274 Embryophyte View MSA
123381087 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.504        
cufflinks 9.495        
cufflinks 10.189        
cufflinks 11.253     High  
cufflinks 29.411     High  
cufflinks 7.418        
cufflinks 30.196     High  
cufflinks 23.323     High  
cufflinks 46.123     High High
cufflinks 3.357        
cufflinks 3.662        
cufflinks 0.029     Low Low
cufflinks 0.056     Low Low
cufflinks 12.029        
cufflinks 0.039     Low Low
cufflinks 17.845     High  
cufflinks 0.014     Low Low
cufflinks 4.573        
cufflinks 11.354     High  
cufflinks 0.014     Low Low

0 Strain