Gene : Seita.9G421200 S. italica v2.2
Defline:  (1 of 2) PTHR23089:SF12 - HIS TRIAD FAMILY PROTEIN 3 Genomic Order:  4212
Name:  ? Seita.9G421200 Secondary Identifier:  ? PAC:32688410
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G421200 0.5kb upstream 0.5kb upstream 2774 true scaffold_9: 47747839-47750612 Setaria italica
Seita.9G421200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47750113-47750612 Setaria italica
Seita.9G421200 0.5kb downstream 0.5kb downstream 2774 true scaffold_9: 47747339-47750112 Setaria italica
Seita.9G421200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47747339-47747838 Setaria italica
Seita.9G421200 1.0kb upstream 1.0kb upstream 3274 true scaffold_9: 47747839-47751112 Setaria italica
Seita.9G421200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47750113-47751112 Setaria italica
Seita.9G421200 1.0kb downstream 1.0kb downstream 3274 true scaffold_9: 47746839-47750112 Setaria italica
Seita.9G421200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47746839-47747838 Setaria italica
Seita.9G421200 2.0kb upstream 2.0kb upstream 4274 true scaffold_9: 47747839-47752112 Setaria italica
Seita.9G421200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47750113-47752112 Setaria italica
Seita.9G421200 2.0kb downstream 2.0kb downstream 4274 true scaffold_9: 47745839-47750112 Setaria italica
Seita.9G421200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47745839-47747838 Setaria italica
Seita.9G421200 5.0kb upstream 5.0kb upstream 7274 true scaffold_9: 47747839-47755112 Setaria italica
Seita.9G421200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47750113-47755112 Setaria italica
Seita.9G421200 5.0kb downstream 5.0kb downstream 7274 true scaffold_9: 47742839-47750112 Setaria italica
Seita.9G421200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47742839-47747838 Setaria italica
Seita.9G421200 10.0kb upstream 10.0kb upstream 12274 true scaffold_9: 47747839-47760112 Setaria italica
Seita.9G421200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47750113-47760112 Setaria italica
Seita.9G421200 10.0kb downstream 10.0kb downstream 12274 true scaffold_9: 47737839-47750112 Setaria italica
Seita.9G421200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47737839-47747838 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183830 5267 Panicoideae View MSA
124581976 5269 Grass View MSA
122041956 5273 Angiosperm View MSA
121349409 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.133     High  
cufflinks 36.239     High  
cufflinks 22.422     High Low
cufflinks 24.548     High  
cufflinks 20.837     High Low
cufflinks 36.083     High  
cufflinks 28.98     High  
cufflinks 48.693     High  
cufflinks 29.305     High  
cufflinks 61.425     High High
cufflinks 27.554     High  
cufflinks 50.817     High  
cufflinks 55.651     High High
cufflinks 30.639     High  
cufflinks 43.445     High  
cufflinks 21.632     High Low
cufflinks 77.129     High High
cufflinks 18.329     High Low
cufflinks 25.042     High  
cufflinks 49.506     High  

0 Strain