Gene : Seita.9G425700 S. italica v2.2
Defline:  (1 of 7) PF07676 - WD40-like Beta Propeller Repeat (PD40) Genomic Order:  4257
Name:  ? Seita.9G425700 Secondary Identifier:  ? PAC:32687800
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G425700 0.5kb upstream 0.5kb upstream 3186 true scaffold_9: 48116190-48119375 Setaria italica
Seita.9G425700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48118876-48119375 Setaria italica
Seita.9G425700 0.5kb downstream 0.5kb downstream 3186 true scaffold_9: 48115690-48118875 Setaria italica
Seita.9G425700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48115690-48116189 Setaria italica
Seita.9G425700 1.0kb upstream 1.0kb upstream 3686 true scaffold_9: 48116190-48119875 Setaria italica
Seita.9G425700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48118876-48119875 Setaria italica
Seita.9G425700 1.0kb downstream 1.0kb downstream 3686 true scaffold_9: 48115190-48118875 Setaria italica
Seita.9G425700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48115190-48116189 Setaria italica
Seita.9G425700 2.0kb upstream 2.0kb upstream 4686 true scaffold_9: 48116190-48120875 Setaria italica
Seita.9G425700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48118876-48120875 Setaria italica
Seita.9G425700 2.0kb downstream 2.0kb downstream 4686 true scaffold_9: 48114190-48118875 Setaria italica
Seita.9G425700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48114190-48116189 Setaria italica
Seita.9G425700 5.0kb upstream 5.0kb upstream 7686 true scaffold_9: 48116190-48123875 Setaria italica
Seita.9G425700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48118876-48123875 Setaria italica
Seita.9G425700 5.0kb downstream 5.0kb downstream 7686 true scaffold_9: 48111190-48118875 Setaria italica
Seita.9G425700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48111190-48116189 Setaria italica
Seita.9G425700 10.0kb upstream 10.0kb upstream 12686 true scaffold_9: 48116190-48128875 Setaria italica
Seita.9G425700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48118876-48128875 Setaria italica
Seita.9G425700 10.0kb downstream 10.0kb downstream 12686 true scaffold_9: 48106190-48118875 Setaria italica
Seita.9G425700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48106190-48116189 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028106 5273 Angiosperm View MSA
122192807 5267 Panicoideae View MSA
124587409 5269 Grass View MSA
121297649 5274 Embryophyte View MSA
123335684 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.451        
cufflinks 0.746       High
cufflinks 0.555        
cufflinks 0.159       Low
cufflinks 0.195       Low
cufflinks 0.417        
cufflinks 0.407        
cufflinks 0.241        
cufflinks 0.225       Low
cufflinks 0.184     Low Low
cufflinks 0.43        
cufflinks 0.434        
cufflinks 0.333        
cufflinks 0.843       High
cufflinks 0.413        
cufflinks 0.849       High
cufflinks 0.473        
cufflinks 0.729       High
cufflinks 0.302        
cufflinks 0.337        

0 Strain