Gene : Seita.9G428800 S. italica v2.2
Defline:  (1 of 1) PTHR10381:SF12 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC Genomic Order:  4288
Name:  ? Seita.9G428800 Secondary Identifier:  ? PAC:32690090
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G428800 0.5kb upstream 0.5kb upstream 3554 true scaffold_9: 48369689-48373242 Setaria italica
Seita.9G428800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48369689-48370188 Setaria italica
Seita.9G428800 0.5kb downstream 0.5kb downstream 3554 true scaffold_9: 48370189-48373742 Setaria italica
Seita.9G428800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48373243-48373742 Setaria italica
Seita.9G428800 1.0kb upstream 1.0kb upstream 4054 true scaffold_9: 48369189-48373242 Setaria italica
Seita.9G428800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48369189-48370188 Setaria italica
Seita.9G428800 1.0kb downstream 1.0kb downstream 4054 true scaffold_9: 48370189-48374242 Setaria italica
Seita.9G428800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48373243-48374242 Setaria italica
Seita.9G428800 2.0kb upstream 2.0kb upstream 5054 true scaffold_9: 48368189-48373242 Setaria italica
Seita.9G428800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48368189-48370188 Setaria italica
Seita.9G428800 2.0kb downstream 2.0kb downstream 5054 true scaffold_9: 48370189-48375242 Setaria italica
Seita.9G428800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48373243-48375242 Setaria italica
Seita.9G428800 5.0kb upstream 5.0kb upstream 8054 true scaffold_9: 48365189-48373242 Setaria italica
Seita.9G428800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48365189-48370188 Setaria italica
Seita.9G428800 5.0kb downstream 5.0kb downstream 8054 true scaffold_9: 48370189-48378242 Setaria italica
Seita.9G428800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48373243-48378242 Setaria italica
Seita.9G428800 10.0kb upstream 10.0kb upstream 13054 true scaffold_9: 48360189-48373242 Setaria italica
Seita.9G428800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48360189-48370188 Setaria italica
Seita.9G428800 10.0kb downstream 10.0kb downstream 13054 true scaffold_9: 48370189-48383242 Setaria italica
Seita.9G428800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48373243-48383242 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198561 5267 Panicoideae View MSA
124576091 5269 Grass View MSA
122043333 5273 Angiosperm View MSA
121344238 5274 Embryophyte View MSA
123424888 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.149     High  
cufflinks 13.928     High  
cufflinks 10.476        
cufflinks 6.814        
cufflinks 11.484     High  
cufflinks 16.261     High  
cufflinks 21.013     High  
cufflinks 32.218     High High
cufflinks 46.713     High High
cufflinks 19.308     High  
cufflinks 10.32        
cufflinks 4.513       Low
cufflinks 4.154       Low
cufflinks 23.608     High High
cufflinks 5.223       Low
cufflinks 14.99     High  
cufflinks 6.294        
cufflinks 10.092        
cufflinks 4.868       Low
cufflinks 5.82        

0 Strain