Gene : Seita.9G427300 S. italica v2.2
Defline:  (1 of 49) PF03140 - Plant protein of unknown function (DUF247) Genomic Order:  4273
Name:  ? Seita.9G427300 Secondary Identifier:  ? PAC:32691221
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G427300 0.5kb upstream 0.5kb upstream 1721 true scaffold_9: 48251895-48253615 Setaria italica
Seita.9G427300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48251895-48252394 Setaria italica
Seita.9G427300 0.5kb downstream 0.5kb downstream 1721 true scaffold_9: 48252395-48254115 Setaria italica
Seita.9G427300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48253616-48254115 Setaria italica
Seita.9G427300 1.0kb upstream 1.0kb upstream 2221 true scaffold_9: 48251395-48253615 Setaria italica
Seita.9G427300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48251395-48252394 Setaria italica
Seita.9G427300 1.0kb downstream 1.0kb downstream 2221 true scaffold_9: 48252395-48254615 Setaria italica
Seita.9G427300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48253616-48254615 Setaria italica
Seita.9G427300 2.0kb upstream 2.0kb upstream 3221 true scaffold_9: 48250395-48253615 Setaria italica
Seita.9G427300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48250395-48252394 Setaria italica
Seita.9G427300 2.0kb downstream 2.0kb downstream 3221 true scaffold_9: 48252395-48255615 Setaria italica
Seita.9G427300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48253616-48255615 Setaria italica
Seita.9G427300 5.0kb upstream 5.0kb upstream 6221 true scaffold_9: 48247395-48253615 Setaria italica
Seita.9G427300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48247395-48252394 Setaria italica
Seita.9G427300 5.0kb downstream 5.0kb downstream 6221 true scaffold_9: 48252395-48258615 Setaria italica
Seita.9G427300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48253616-48258615 Setaria italica
Seita.9G427300 10.0kb upstream 10.0kb upstream 11221 true scaffold_9: 48242395-48253615 Setaria italica
Seita.9G427300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48242395-48252394 Setaria italica
Seita.9G427300 10.0kb downstream 10.0kb downstream 11221 true scaffold_9: 48252395-48263615 Setaria italica
Seita.9G427300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48253616-48263615 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993377 5273 Angiosperm View MSA
122186683 5267 Panicoideae View MSA
124577922 5269 Grass View MSA
121263662 5274 Embryophyte View MSA
123302178 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.142        
cufflinks 0.057     Low Low
cufflinks 0.09        
cufflinks 0.104        
cufflinks 0.074     Low  
cufflinks 0.09     Low  
cufflinks 0.091     Low  
cufflinks 0.038     Low Low
cufflinks 0.09     Low  
cufflinks 1.673       High
cufflinks 0.191        
cufflinks 1.044       High
cufflinks 0.683        
cufflinks 1.251       High
cufflinks 0.747        
cufflinks 0.031     Low Low
cufflinks 0.98        
cufflinks 0.156        
cufflinks 1.708       High
cufflinks 2.102       High

0 Strain