Gene : Seita.9G428200 S. italica v2.2
Defline:  (1 of 1) PTHR36044:SF1 - HEME BINDING PROTEIN Genomic Order:  4282
Name:  ? Seita.9G428200 Secondary Identifier:  ? PAC:32688327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G428200 0.5kb upstream 0.5kb upstream 3974 true scaffold_9: 48326260-48330233 Setaria italica
Seita.9G428200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48326260-48326759 Setaria italica
Seita.9G428200 0.5kb downstream 0.5kb downstream 3974 true scaffold_9: 48326760-48330733 Setaria italica
Seita.9G428200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48330234-48330733 Setaria italica
Seita.9G428200 1.0kb upstream 1.0kb upstream 4474 true scaffold_9: 48325760-48330233 Setaria italica
Seita.9G428200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48325760-48326759 Setaria italica
Seita.9G428200 1.0kb downstream 1.0kb downstream 4474 true scaffold_9: 48326760-48331233 Setaria italica
Seita.9G428200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48330234-48331233 Setaria italica
Seita.9G428200 2.0kb upstream 2.0kb upstream 5474 true scaffold_9: 48324760-48330233 Setaria italica
Seita.9G428200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48324760-48326759 Setaria italica
Seita.9G428200 2.0kb downstream 2.0kb downstream 5474 true scaffold_9: 48326760-48332233 Setaria italica
Seita.9G428200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48330234-48332233 Setaria italica
Seita.9G428200 5.0kb upstream 5.0kb upstream 8474 true scaffold_9: 48321760-48330233 Setaria italica
Seita.9G428200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48321760-48326759 Setaria italica
Seita.9G428200 5.0kb downstream 5.0kb downstream 8474 true scaffold_9: 48326760-48335233 Setaria italica
Seita.9G428200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48330234-48335233 Setaria italica
Seita.9G428200 10.0kb upstream 10.0kb upstream 13474 true scaffold_9: 48316760-48330233 Setaria italica
Seita.9G428200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48316760-48326759 Setaria italica
Seita.9G428200 10.0kb downstream 10.0kb downstream 13474 true scaffold_9: 48326760-48340233 Setaria italica
Seita.9G428200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48330234-48340233 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041410 5273 Angiosperm View MSA
122177928 5267 Panicoideae View MSA
124579320 5269 Grass View MSA
121347553 5274 Embryophyte View MSA
123380570 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.694     High  
cufflinks 12.292        
cufflinks 7.165       Low
cufflinks 5.552       Low
cufflinks 5.537       Low
cufflinks 11.028        
cufflinks 8.368        
cufflinks 8.264        
cufflinks 6.518       Low
cufflinks 18.353     High High
cufflinks 13.615     High  
cufflinks 17.497     High High
cufflinks 12.954        
cufflinks 13.501        
cufflinks 18.316     High High
cufflinks 6.358       Low
cufflinks 21.207     High High
cufflinks 14.161     High  
cufflinks 10.727        
cufflinks 18.346     High High

0 Strain