Gene : Seita.9G431200 S. italica v2.2
Defline:  (1 of 3) 4.3.2.1 - Argininosuccinate lyase / Omega-N-(L-arginino)succinate arginine-lyase Genomic Order:  4312
Name:  ? Seita.9G431200 Secondary Identifier:  ? PAC:32689711
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGSYNBSUB-PWY Setaria italica pathologic  
Sitalica ARGSYN-PWY Setaria italica pathologic  
Sitalica PWY-4984 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G431200 0.5kb upstream 0.5kb upstream 6644 true scaffold_9: 48508725-48515368 Setaria italica
Seita.9G431200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48514869-48515368 Setaria italica
Seita.9G431200 0.5kb downstream 0.5kb downstream 6644 true scaffold_9: 48508225-48514868 Setaria italica
Seita.9G431200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48508225-48508724 Setaria italica
Seita.9G431200 1.0kb upstream 1.0kb upstream 7144 true scaffold_9: 48508725-48515868 Setaria italica
Seita.9G431200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48514869-48515868 Setaria italica
Seita.9G431200 1.0kb downstream 1.0kb downstream 7144 true scaffold_9: 48507725-48514868 Setaria italica
Seita.9G431200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48507725-48508724 Setaria italica
Seita.9G431200 2.0kb upstream 2.0kb upstream 8144 true scaffold_9: 48508725-48516868 Setaria italica
Seita.9G431200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48514869-48516868 Setaria italica
Seita.9G431200 2.0kb downstream 2.0kb downstream 8144 true scaffold_9: 48506725-48514868 Setaria italica
Seita.9G431200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48506725-48508724 Setaria italica
Seita.9G431200 5.0kb upstream 5.0kb upstream 11144 true scaffold_9: 48508725-48519868 Setaria italica
Seita.9G431200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48514869-48519868 Setaria italica
Seita.9G431200 5.0kb downstream 5.0kb downstream 11144 true scaffold_9: 48503725-48514868 Setaria italica
Seita.9G431200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48503725-48508724 Setaria italica
Seita.9G431200 10.0kb upstream 10.0kb upstream 16144 true scaffold_9: 48508725-48524868 Setaria italica
Seita.9G431200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48514869-48524868 Setaria italica
Seita.9G431200 10.0kb downstream 10.0kb downstream 16144 true scaffold_9: 48498725-48514868 Setaria italica
Seita.9G431200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48498725-48508724 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185021 5267 Panicoideae View MSA
124587066 5269 Grass View MSA
122042713 5273 Angiosperm View MSA
121348012 5274 Embryophyte View MSA
123425027 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.463        
cufflinks 6.058        
cufflinks 1.732       Low
cufflinks 1.624       Low
cufflinks 3.02        
cufflinks 5.848        
cufflinks 4.266        
cufflinks 5.438        
cufflinks 9.193        
cufflinks 8.363        
cufflinks 7.847        
cufflinks 11.476       High
cufflinks 9.494        
cufflinks 3.207        
cufflinks 10.66        
cufflinks 3.741        
cufflinks 15.009     High High
cufflinks 5.02        
cufflinks 1.466       Low
cufflinks 12.027       High

0 Strain