Gene : Seita.9G431100 S. italica v2.2
Defline:  (1 of 1) PTHR15371:SF1 - OUTER ENVELOPE PORE PROTEIN 16-2, CHLOROPLASTIC Genomic Order:  4311
Name:  ? Seita.9G431100 Secondary Identifier:  ? PAC:32691053
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G431100 0.5kb upstream 0.5kb upstream 1880 true scaffold_9: 48506773-48508652 Setaria italica
Seita.9G431100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48508153-48508652 Setaria italica
Seita.9G431100 0.5kb downstream 0.5kb downstream 1880 true scaffold_9: 48506273-48508152 Setaria italica
Seita.9G431100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48506273-48506772 Setaria italica
Seita.9G431100 1.0kb upstream 1.0kb upstream 2380 true scaffold_9: 48506773-48509152 Setaria italica
Seita.9G431100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48508153-48509152 Setaria italica
Seita.9G431100 1.0kb downstream 1.0kb downstream 2380 true scaffold_9: 48505773-48508152 Setaria italica
Seita.9G431100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48505773-48506772 Setaria italica
Seita.9G431100 2.0kb upstream 2.0kb upstream 3380 true scaffold_9: 48506773-48510152 Setaria italica
Seita.9G431100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48508153-48510152 Setaria italica
Seita.9G431100 2.0kb downstream 2.0kb downstream 3380 true scaffold_9: 48504773-48508152 Setaria italica
Seita.9G431100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48504773-48506772 Setaria italica
Seita.9G431100 5.0kb upstream 5.0kb upstream 6380 true scaffold_9: 48506773-48513152 Setaria italica
Seita.9G431100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48508153-48513152 Setaria italica
Seita.9G431100 5.0kb downstream 5.0kb downstream 6380 true scaffold_9: 48501773-48508152 Setaria italica
Seita.9G431100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48501773-48506772 Setaria italica
Seita.9G431100 10.0kb upstream 10.0kb upstream 11380 true scaffold_9: 48506773-48518152 Setaria italica
Seita.9G431100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48508153-48518152 Setaria italica
Seita.9G431100 10.0kb downstream 10.0kb downstream 11380 true scaffold_9: 48496773-48508152 Setaria italica
Seita.9G431100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48496773-48506772 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182578 5267 Panicoideae View MSA
124570119 5269 Grass View MSA
122042024 5273 Angiosperm View MSA
121351081 5274 Embryophyte View MSA
123382000 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.453       High
cufflinks 0.216        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low Low
cufflinks 0.327        
cufflinks 0.011     Low Low
cufflinks 0.054     Low Low
cufflinks 0.077     Low  
cufflinks 0.218     Low  
cufflinks 0.468        
cufflinks 0.11     Low  
cufflinks 0.916       High
cufflinks 0.1     Low  
cufflinks 0.25        
cufflinks 0.467        
cufflinks 0.583        
cufflinks 1.11       High
cufflinks 0.374        
cufflinks 0.199        

0 Strain