Gene : Seita.9G430200 S. italica v2.2
Defline:  (1 of 1) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  4302
Name:  ? Seita.9G430200 Secondary Identifier:  ? PAC:32689327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G430200 0.5kb upstream 0.5kb upstream 893 true scaffold_9: 48440473-48441365 Setaria italica
Seita.9G430200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48440866-48441365 Setaria italica
Seita.9G430200 0.5kb downstream 0.5kb downstream 893 true scaffold_9: 48439973-48440865 Setaria italica
Seita.9G430200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48439973-48440472 Setaria italica
Seita.9G430200 1.0kb upstream 1.0kb upstream 1393 true scaffold_9: 48440473-48441865 Setaria italica
Seita.9G430200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48440866-48441865 Setaria italica
Seita.9G430200 1.0kb downstream 1.0kb downstream 1393 true scaffold_9: 48439473-48440865 Setaria italica
Seita.9G430200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48439473-48440472 Setaria italica
Seita.9G430200 2.0kb upstream 2.0kb upstream 2393 true scaffold_9: 48440473-48442865 Setaria italica
Seita.9G430200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48440866-48442865 Setaria italica
Seita.9G430200 2.0kb downstream 2.0kb downstream 2393 true scaffold_9: 48438473-48440865 Setaria italica
Seita.9G430200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48438473-48440472 Setaria italica
Seita.9G430200 5.0kb upstream 5.0kb upstream 5393 true scaffold_9: 48440473-48445865 Setaria italica
Seita.9G430200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48440866-48445865 Setaria italica
Seita.9G430200 5.0kb downstream 5.0kb downstream 5393 true scaffold_9: 48435473-48440865 Setaria italica
Seita.9G430200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48435473-48440472 Setaria italica
Seita.9G430200 10.0kb upstream 10.0kb upstream 10393 true scaffold_9: 48440473-48450865 Setaria italica
Seita.9G430200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48440866-48450865 Setaria italica
Seita.9G430200 10.0kb downstream 10.0kb downstream 10393 true scaffold_9: 48430473-48440865 Setaria italica
Seita.9G430200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48430473-48440472 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189240 5267 Panicoideae View MSA
124571064 5269 Grass View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.371     High  
cufflinks 76.163     High  
cufflinks 16.61     High  
cufflinks 15.461     High  
cufflinks 39.798     High  
cufflinks 83.301     High  
cufflinks 107.781     High  
cufflinks 142.624     High High
cufflinks 150.909     High High
cufflinks 89.302     High  
cufflinks 22.88     High  
cufflinks 1.099       Low
cufflinks 4.937        
cufflinks 51.725     High  
cufflinks 0.819       Low
cufflinks 78.872     High  
cufflinks 3.179       Low
cufflinks 24.586     High  
cufflinks 23.114     High  
cufflinks 1.025       Low

0 Strain