Gene : Seita.9G437400 S. italica v2.2
Defline:  (1 of 1) 2.3.1.39 - [Acyl-carrier-protein] S-malonyltransferase / MCAT Genomic Order:  4374
Name:  ? Seita.9G437400 Secondary Identifier:  ? PAC:32690892
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4381 Setaria italica pathologic  
Sitalica PWY-5156 Setaria italica pathologic  
Sitalica PWY-7388 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G437400 0.5kb upstream 0.5kb upstream 3643 true scaffold_9: 49002141-49005783 Setaria italica
Seita.9G437400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49002141-49002640 Setaria italica
Seita.9G437400 0.5kb downstream 0.5kb downstream 3643 true scaffold_9: 49002641-49006283 Setaria italica
Seita.9G437400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49005784-49006283 Setaria italica
Seita.9G437400 1.0kb upstream 1.0kb upstream 4143 true scaffold_9: 49001641-49005783 Setaria italica
Seita.9G437400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49001641-49002640 Setaria italica
Seita.9G437400 1.0kb downstream 1.0kb downstream 4143 true scaffold_9: 49002641-49006783 Setaria italica
Seita.9G437400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49005784-49006783 Setaria italica
Seita.9G437400 2.0kb upstream 2.0kb upstream 5143 true scaffold_9: 49000641-49005783 Setaria italica
Seita.9G437400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49000641-49002640 Setaria italica
Seita.9G437400 2.0kb downstream 2.0kb downstream 5143 true scaffold_9: 49002641-49007783 Setaria italica
Seita.9G437400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49005784-49007783 Setaria italica
Seita.9G437400 5.0kb upstream 5.0kb upstream 8143 true scaffold_9: 48997641-49005783 Setaria italica
Seita.9G437400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48997641-49002640 Setaria italica
Seita.9G437400 5.0kb downstream 5.0kb downstream 8143 true scaffold_9: 49002641-49010783 Setaria italica
Seita.9G437400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49005784-49010783 Setaria italica
Seita.9G437400 10.0kb upstream 10.0kb upstream 13143 true scaffold_9: 48992641-49005783 Setaria italica
Seita.9G437400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48992641-49002640 Setaria italica
Seita.9G437400 10.0kb downstream 10.0kb downstream 13143 true scaffold_9: 49002641-49015783 Setaria italica
Seita.9G437400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49005784-49015783 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041321 5273 Angiosperm View MSA
122185850 5267 Panicoideae View MSA
124570582 5269 Grass View MSA
121346030 5274 Embryophyte View MSA
123426767 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.016     High  
cufflinks 30.934     High  
cufflinks 8.529       Low
cufflinks 6.154       Low
cufflinks 10.176       Low
cufflinks 24.923     High  
cufflinks 34.331     High  
cufflinks 45.855     High High
cufflinks 48.686     High High
cufflinks 25.924     High  
cufflinks 29.345     High  
cufflinks 20.452     High  
cufflinks 15.579     High  
cufflinks 12.469        
cufflinks 29.247     High  
cufflinks 19.516     High  
cufflinks 28.752     High  
cufflinks 12.674     High  
cufflinks 7.503       Low
cufflinks 33.943     High  

0 Strain