Gene : Seita.9G435700 S. italica v2.2
Defline:  (1 of 3) 2.6.1.83 - LL-diaminopimelate aminotransferase / LL-diaminopimelate transaminase Genomic Order:  4357
Name:  ? Seita.9G435700 Secondary Identifier:  ? PAC:32692237
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G435700 0.5kb upstream 0.5kb upstream 4024 true scaffold_9: 48852242-48856265 Setaria italica
Seita.9G435700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48855766-48856265 Setaria italica
Seita.9G435700 0.5kb downstream 0.5kb downstream 4024 true scaffold_9: 48851742-48855765 Setaria italica
Seita.9G435700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48851742-48852241 Setaria italica
Seita.9G435700 1.0kb upstream 1.0kb upstream 4524 true scaffold_9: 48852242-48856765 Setaria italica
Seita.9G435700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48855766-48856765 Setaria italica
Seita.9G435700 1.0kb downstream 1.0kb downstream 4524 true scaffold_9: 48851242-48855765 Setaria italica
Seita.9G435700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48851242-48852241 Setaria italica
Seita.9G435700 2.0kb upstream 2.0kb upstream 5524 true scaffold_9: 48852242-48857765 Setaria italica
Seita.9G435700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48855766-48857765 Setaria italica
Seita.9G435700 2.0kb downstream 2.0kb downstream 5524 true scaffold_9: 48850242-48855765 Setaria italica
Seita.9G435700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48850242-48852241 Setaria italica
Seita.9G435700 5.0kb upstream 5.0kb upstream 8524 true scaffold_9: 48852242-48860765 Setaria italica
Seita.9G435700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48855766-48860765 Setaria italica
Seita.9G435700 5.0kb downstream 5.0kb downstream 8524 true scaffold_9: 48847242-48855765 Setaria italica
Seita.9G435700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48847242-48852241 Setaria italica
Seita.9G435700 10.0kb upstream 10.0kb upstream 13524 true scaffold_9: 48852242-48865765 Setaria italica
Seita.9G435700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48855766-48865765 Setaria italica
Seita.9G435700 10.0kb downstream 10.0kb downstream 13524 true scaffold_9: 48842242-48855765 Setaria italica
Seita.9G435700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48842242-48852241 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194644 5267 Panicoideae View MSA
124590449 5269 Grass View MSA
122045161 5273 Angiosperm View MSA
121344343 5274 Embryophyte View MSA
123424947 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.128        
cufflinks 13.686     High  
cufflinks 8.517        
cufflinks 5.94       Low
cufflinks 18.022     High  
cufflinks 10.319        
cufflinks 24.952     High High
cufflinks 28.984     High High
cufflinks 49.521     High High
cufflinks 13.043        
cufflinks 12.826        
cufflinks 7.72        
cufflinks 5.003       Low
cufflinks 15.125     High  
cufflinks 9.901        
cufflinks 15.376     High  
cufflinks 10.318        
cufflinks 10.939        
cufflinks 6.323       Low
cufflinks 10.768        

0 Strain