Gene : Seita.9G438600 S. italica v2.2
Defline:  (1 of 3) PTHR10369 - 60S RIBOSOMAL PROTEIN L36A/L44 Genomic Order:  4386
Name:  ? Seita.9G438600 Secondary Identifier:  ? PAC:32690499
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G438600 0.5kb upstream 0.5kb upstream 2727 true scaffold_9: 49043283-49046009 Setaria italica
Seita.9G438600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49043283-49043782 Setaria italica
Seita.9G438600 0.5kb downstream 0.5kb downstream 2727 true scaffold_9: 49043783-49046509 Setaria italica
Seita.9G438600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49046010-49046509 Setaria italica
Seita.9G438600 1.0kb upstream 1.0kb upstream 3227 true scaffold_9: 49042783-49046009 Setaria italica
Seita.9G438600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49042783-49043782 Setaria italica
Seita.9G438600 1.0kb downstream 1.0kb downstream 3227 true scaffold_9: 49043783-49047009 Setaria italica
Seita.9G438600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49046010-49047009 Setaria italica
Seita.9G438600 2.0kb upstream 2.0kb upstream 4227 true scaffold_9: 49041783-49046009 Setaria italica
Seita.9G438600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49041783-49043782 Setaria italica
Seita.9G438600 2.0kb downstream 2.0kb downstream 4227 true scaffold_9: 49043783-49048009 Setaria italica
Seita.9G438600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49046010-49048009 Setaria italica
Seita.9G438600 5.0kb upstream 5.0kb upstream 7227 true scaffold_9: 49038783-49046009 Setaria italica
Seita.9G438600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49038783-49043782 Setaria italica
Seita.9G438600 5.0kb downstream 5.0kb downstream 7227 true scaffold_9: 49043783-49051009 Setaria italica
Seita.9G438600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49046010-49051009 Setaria italica
Seita.9G438600 10.0kb upstream 10.0kb upstream 12227 true scaffold_9: 49033783-49046009 Setaria italica
Seita.9G438600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49033783-49043782 Setaria italica
Seita.9G438600 10.0kb downstream 10.0kb downstream 12227 true scaffold_9: 49043783-49056009 Setaria italica
Seita.9G438600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49046010-49056009 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197862 5267 Panicoideae View MSA
124572857 5269 Grass View MSA
122044420 5273 Angiosperm View MSA
121349788 5274 Embryophyte View MSA
123423968 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 99.555     High  
cufflinks 128.085     High  
cufflinks 26.17     High Low
cufflinks 20.612     High Low
cufflinks 32.306     High Low
cufflinks 147.707     High  
cufflinks 105.632     High  
cufflinks 194.118     High High
cufflinks 201.977     High High
cufflinks 256.739     High High
cufflinks 122.791     High  
cufflinks 127.304     High  
cufflinks 98.972     High  
cufflinks 61.817     High  
cufflinks 129.468     High  
cufflinks 59.297     High  
cufflinks 186.219     High  
cufflinks 50.25     High  
cufflinks 42.123     High Low
cufflinks 160.972     High  

0 Strain