Gene : Seita.9G441300 S. italica v2.2
Defline:  (1 of 1) PTHR11200:SF120 - PHOSPHOINOSITIDE PHOSPHATASE SAC6-RELATED Genomic Order:  4413
Name:  ? Seita.9G441300 Secondary Identifier:  ? PAC:32687781
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6368 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G441300 0.5kb upstream 0.5kb upstream 9497 true scaffold_9: 49249745-49259241 Setaria italica
Seita.9G441300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49249745-49250244 Setaria italica
Seita.9G441300 0.5kb downstream 0.5kb downstream 9497 true scaffold_9: 49250245-49259741 Setaria italica
Seita.9G441300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49259242-49259741 Setaria italica
Seita.9G441300 1.0kb upstream 1.0kb upstream 9997 true scaffold_9: 49249245-49259241 Setaria italica
Seita.9G441300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49249245-49250244 Setaria italica
Seita.9G441300 1.0kb downstream 1.0kb downstream 9997 true scaffold_9: 49250245-49260241 Setaria italica
Seita.9G441300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49259242-49260241 Setaria italica
Seita.9G441300 2.0kb upstream 2.0kb upstream 10997 true scaffold_9: 49248245-49259241 Setaria italica
Seita.9G441300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49248245-49250244 Setaria italica
Seita.9G441300 2.0kb downstream 2.0kb downstream 10997 true scaffold_9: 49250245-49261241 Setaria italica
Seita.9G441300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49259242-49261241 Setaria italica
Seita.9G441300 5.0kb upstream 5.0kb upstream 13997 true scaffold_9: 49245245-49259241 Setaria italica
Seita.9G441300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49245245-49250244 Setaria italica
Seita.9G441300 5.0kb downstream 5.0kb downstream 13997 true scaffold_9: 49250245-49264241 Setaria italica
Seita.9G441300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49259242-49264241 Setaria italica
Seita.9G441300 10.0kb upstream 10.0kb upstream 18997 true scaffold_9: 49240245-49259241 Setaria italica
Seita.9G441300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49240245-49250244 Setaria italica
Seita.9G441300 10.0kb downstream 10.0kb downstream 18997 true scaffold_9: 49250245-49269241 Setaria italica
Seita.9G441300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49259242-49269241 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181690 5267 Panicoideae View MSA
124573460 5269 Grass View MSA
122049709 5273 Angiosperm View MSA
121351625 5274 Embryophyte View MSA
123428410 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.276       High
cufflinks 2.056        
cufflinks 1.258        
cufflinks 0.883       Low
cufflinks 0.875       Low
cufflinks 2.211       High
cufflinks 1.428        
cufflinks 1.958        
cufflinks 1.187        
cufflinks 1.445        
cufflinks 2.112        
cufflinks 2.163        
cufflinks 1.71        
cufflinks 1.146       Low
cufflinks 1.757        
cufflinks 1.488        
cufflinks 2.277       High
cufflinks 1.526        
cufflinks 1.172        
cufflinks 2.254       High

0 Strain