Gene : Seita.9G523200 S. italica v2.2
Defline:  (1 of 2) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG Genomic Order:  5232
Name:  ? Seita.9G523200 Secondary Identifier:  ? PAC:32687949
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G523200 0.5kb upstream 0.5kb upstream 5553 true scaffold_9: 55117906-55123458 Setaria italica
Seita.9G523200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55122959-55123458 Setaria italica
Seita.9G523200 0.5kb downstream 0.5kb downstream 5553 true scaffold_9: 55117406-55122958 Setaria italica
Seita.9G523200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55117406-55117905 Setaria italica
Seita.9G523200 1.0kb upstream 1.0kb upstream 6053 true scaffold_9: 55117906-55123958 Setaria italica
Seita.9G523200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55122959-55123958 Setaria italica
Seita.9G523200 1.0kb downstream 1.0kb downstream 6053 true scaffold_9: 55116906-55122958 Setaria italica
Seita.9G523200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55116906-55117905 Setaria italica
Seita.9G523200 2.0kb upstream 2.0kb upstream 7053 true scaffold_9: 55117906-55124958 Setaria italica
Seita.9G523200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55122959-55124958 Setaria italica
Seita.9G523200 2.0kb downstream 2.0kb downstream 7053 true scaffold_9: 55115906-55122958 Setaria italica
Seita.9G523200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55115906-55117905 Setaria italica
Seita.9G523200 5.0kb upstream 5.0kb upstream 10053 true scaffold_9: 55117906-55127958 Setaria italica
Seita.9G523200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55122959-55127958 Setaria italica
Seita.9G523200 5.0kb downstream 5.0kb downstream 10053 true scaffold_9: 55112906-55122958 Setaria italica
Seita.9G523200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55112906-55117905 Setaria italica
Seita.9G523200 10.0kb upstream 10.0kb upstream 15053 true scaffold_9: 55117906-55132958 Setaria italica
Seita.9G523200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55122959-55132958 Setaria italica
Seita.9G523200 10.0kb downstream 10.0kb downstream 15053 true scaffold_9: 55107906-55122958 Setaria italica
Seita.9G523200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55107906-55117905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196186 5267 Panicoideae View MSA
124588760 5269 Grass View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.915     High High
cufflinks 21.121     High High
cufflinks 18.299     High  
cufflinks 14.025     High  
cufflinks 12.614     High  
cufflinks 20.303     High High
cufflinks 14.556     High  
cufflinks 12.147       Low
cufflinks 14.811     High  
cufflinks 10.68       Low
cufflinks 20.745     High High
cufflinks 14.709     High  
cufflinks 11.439       Low
cufflinks 14.671     High  
cufflinks 18.487     High  
cufflinks 17.546     High  
cufflinks 16.074     High  
cufflinks 18.345     High  
cufflinks 10.14       Low
cufflinks 16.936     High  

0 Strain