Gene : Seita.9G529300 S. italica v2.2
Defline:  (1 of 2) PTHR11390:SF21 - DNA TOPOISOMERASE 3-ALPHA Genomic Order:  5293
Name:  ? Seita.9G529300 Secondary Identifier:  ? PAC:32693017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G529300 0.5kb upstream 0.5kb upstream 13642 true scaffold_9: 55479746-55493387 Setaria italica
Seita.9G529300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55479746-55480245 Setaria italica
Seita.9G529300 0.5kb downstream 0.5kb downstream 13642 true scaffold_9: 55480246-55493887 Setaria italica
Seita.9G529300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55493388-55493887 Setaria italica
Seita.9G529300 1.0kb upstream 1.0kb upstream 14142 true scaffold_9: 55479246-55493387 Setaria italica
Seita.9G529300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55479246-55480245 Setaria italica
Seita.9G529300 1.0kb downstream 1.0kb downstream 14142 true scaffold_9: 55480246-55494387 Setaria italica
Seita.9G529300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55493388-55494387 Setaria italica
Seita.9G529300 2.0kb upstream 2.0kb upstream 15142 true scaffold_9: 55478246-55493387 Setaria italica
Seita.9G529300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55478246-55480245 Setaria italica
Seita.9G529300 2.0kb downstream 2.0kb downstream 15142 true scaffold_9: 55480246-55495387 Setaria italica
Seita.9G529300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55493388-55495387 Setaria italica
Seita.9G529300 5.0kb upstream 5.0kb upstream 18142 true scaffold_9: 55475246-55493387 Setaria italica
Seita.9G529300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55475246-55480245 Setaria italica
Seita.9G529300 5.0kb downstream 5.0kb downstream 18142 true scaffold_9: 55480246-55498387 Setaria italica
Seita.9G529300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55493388-55498387 Setaria italica
Seita.9G529300 10.0kb upstream 10.0kb upstream 23142 true scaffold_9: 55470246-55493387 Setaria italica
Seita.9G529300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55470246-55480245 Setaria italica
Seita.9G529300 10.0kb downstream 10.0kb downstream 23142 true scaffold_9: 55480246-55503387 Setaria italica
Seita.9G529300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55493388-55503387 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041072 5273 Angiosperm View MSA
122187977 5267 Panicoideae View MSA
124571003 5269 Grass View MSA
121346575 5274 Embryophyte View MSA
123425013 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.555        
cufflinks 0.804        
cufflinks 0.257       Low
cufflinks 0.274       Low
cufflinks 0.263       Low
cufflinks 0.634        
cufflinks 0.777        
cufflinks 0.876       High
cufflinks 0.618        
cufflinks 0.355        
cufflinks 0.861       High
cufflinks 0.596        
cufflinks 0.307       Low
cufflinks 0.467        
cufflinks 0.62        
cufflinks 0.426        
cufflinks 0.62        
cufflinks 1.441       High
cufflinks 0.21       Low
cufflinks 0.573        

0 Strain