Gene : Seita.9G533700 S. italica v2.2
Defline:  (1 of 1) PTHR21596//PTHR21596:SF11 - RIBONUCLEASE P SUBUNIT P38 Genomic Order:  5337
Name:  ? Seita.9G533700 Secondary Identifier:  ? PAC:32692976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G533700 0.5kb upstream 0.5kb upstream 9586 true scaffold_9: 55777131-55786716 Setaria italica
Seita.9G533700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55786217-55786716 Setaria italica
Seita.9G533700 0.5kb downstream 0.5kb downstream 9586 true scaffold_9: 55776631-55786216 Setaria italica
Seita.9G533700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55776631-55777130 Setaria italica
Seita.9G533700 1.0kb upstream 1.0kb upstream 10086 true scaffold_9: 55777131-55787216 Setaria italica
Seita.9G533700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55786217-55787216 Setaria italica
Seita.9G533700 1.0kb downstream 1.0kb downstream 10086 true scaffold_9: 55776131-55786216 Setaria italica
Seita.9G533700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55776131-55777130 Setaria italica
Seita.9G533700 2.0kb upstream 2.0kb upstream 11086 true scaffold_9: 55777131-55788216 Setaria italica
Seita.9G533700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55786217-55788216 Setaria italica
Seita.9G533700 2.0kb downstream 2.0kb downstream 11086 true scaffold_9: 55775131-55786216 Setaria italica
Seita.9G533700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55775131-55777130 Setaria italica
Seita.9G533700 5.0kb upstream 5.0kb upstream 14086 true scaffold_9: 55777131-55791216 Setaria italica
Seita.9G533700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55786217-55791216 Setaria italica
Seita.9G533700 5.0kb downstream 5.0kb downstream 14086 true scaffold_9: 55772131-55786216 Setaria italica
Seita.9G533700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55772131-55777130 Setaria italica
Seita.9G533700 10.0kb upstream 10.0kb upstream 19086 true scaffold_9: 55777131-55796216 Setaria italica
Seita.9G533700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55786217-55796216 Setaria italica
Seita.9G533700 10.0kb downstream 10.0kb downstream 19086 true scaffold_9: 55767131-55786216 Setaria italica
Seita.9G533700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55767131-55777130 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180314 5267 Panicoideae View MSA
124576905 5269 Grass View MSA
122042202 5273 Angiosperm View MSA
121309933 5274 Embryophyte View MSA
123347562 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.466        
cufflinks 1.681        
cufflinks 1.138        
cufflinks 0.986       Low
cufflinks 0.78       Low
cufflinks 1.867       High
cufflinks 1.166        
cufflinks 1.814        
cufflinks 0.851       Low
cufflinks 1.808        
cufflinks 1.435        
cufflinks 1.832       High
cufflinks 1.061        
cufflinks 1.27        
cufflinks 1.709        
cufflinks 1.284        
cufflinks 1.997       High
cufflinks 1.868       High
cufflinks 0.951       Low
cufflinks 1.481        

0 Strain