Gene : Seita.9G532000 S. italica v2.2
Defline:  (1 of 3) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Genomic Order:  5320
Name:  ? Seita.9G532000 Secondary Identifier:  ? PAC:32692808
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4361 Setaria italica pathologic  
Sitalica PWY-5389 Setaria italica pathologic  
Sitalica PWY-7270 Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G532000 0.5kb upstream 0.5kb upstream 3924 true scaffold_9: 55658305-55662228 Setaria italica
Seita.9G532000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55661729-55662228 Setaria italica
Seita.9G532000 0.5kb downstream 0.5kb downstream 3924 true scaffold_9: 55657805-55661728 Setaria italica
Seita.9G532000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55657805-55658304 Setaria italica
Seita.9G532000 1.0kb upstream 1.0kb upstream 4424 true scaffold_9: 55658305-55662728 Setaria italica
Seita.9G532000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55661729-55662728 Setaria italica
Seita.9G532000 1.0kb downstream 1.0kb downstream 4424 true scaffold_9: 55657305-55661728 Setaria italica
Seita.9G532000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55657305-55658304 Setaria italica
Seita.9G532000 2.0kb upstream 2.0kb upstream 5424 true scaffold_9: 55658305-55663728 Setaria italica
Seita.9G532000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55661729-55663728 Setaria italica
Seita.9G532000 2.0kb downstream 2.0kb downstream 5424 true scaffold_9: 55656305-55661728 Setaria italica
Seita.9G532000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55656305-55658304 Setaria italica
Seita.9G532000 5.0kb upstream 5.0kb upstream 8424 true scaffold_9: 55658305-55666728 Setaria italica
Seita.9G532000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55661729-55666728 Setaria italica
Seita.9G532000 5.0kb downstream 5.0kb downstream 8424 true scaffold_9: 55653305-55661728 Setaria italica
Seita.9G532000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55653305-55658304 Setaria italica
Seita.9G532000 10.0kb upstream 10.0kb upstream 13424 true scaffold_9: 55658305-55671728 Setaria italica
Seita.9G532000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55661729-55671728 Setaria italica
Seita.9G532000 10.0kb downstream 10.0kb downstream 13424 true scaffold_9: 55648305-55661728 Setaria italica
Seita.9G532000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55648305-55658304 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175571 5267 Panicoideae View MSA
124587161 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.61     High  
cufflinks 25.919     High  
cufflinks 25.171     High  
cufflinks 22.596     High  
cufflinks 20.617     High  
cufflinks 20.772     High  
cufflinks 20.016     High  
cufflinks 21.883     High  
cufflinks 18.145     High  
cufflinks 13.249       Low
cufflinks 19.532     High  
cufflinks 39.327     High High
cufflinks 36.923     High High
cufflinks 29.93     High  
cufflinks 30.249     High  
cufflinks 16.627     High Low
cufflinks 18.795     High  
cufflinks 28.934     High  
cufflinks 30.458     High  
cufflinks 28.896     High  

0 Strain