Gene : Seita.9G536000 S. italica v2.2
Defline:  (1 of 2) PTHR12855:SF10 - DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 Genomic Order:  5360
Name:  ? Seita.9G536000 Secondary Identifier:  ? PAC:32693333
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G536000 0.5kb upstream 0.5kb upstream 7279 true scaffold_9: 55925904-55933182 Setaria italica
Seita.9G536000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55925904-55926403 Setaria italica
Seita.9G536000 0.5kb downstream 0.5kb downstream 7279 true scaffold_9: 55926404-55933682 Setaria italica
Seita.9G536000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55933183-55933682 Setaria italica
Seita.9G536000 1.0kb upstream 1.0kb upstream 7779 true scaffold_9: 55925404-55933182 Setaria italica
Seita.9G536000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55925404-55926403 Setaria italica
Seita.9G536000 1.0kb downstream 1.0kb downstream 7779 true scaffold_9: 55926404-55934182 Setaria italica
Seita.9G536000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55933183-55934182 Setaria italica
Seita.9G536000 2.0kb upstream 2.0kb upstream 8779 true scaffold_9: 55924404-55933182 Setaria italica
Seita.9G536000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55924404-55926403 Setaria italica
Seita.9G536000 2.0kb downstream 2.0kb downstream 8779 true scaffold_9: 55926404-55935182 Setaria italica
Seita.9G536000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55933183-55935182 Setaria italica
Seita.9G536000 5.0kb upstream 5.0kb upstream 11779 true scaffold_9: 55921404-55933182 Setaria italica
Seita.9G536000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55921404-55926403 Setaria italica
Seita.9G536000 5.0kb downstream 5.0kb downstream 11779 true scaffold_9: 55926404-55938182 Setaria italica
Seita.9G536000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55933183-55938182 Setaria italica
Seita.9G536000 10.0kb upstream 10.0kb upstream 16779 true scaffold_9: 55916404-55933182 Setaria italica
Seita.9G536000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55916404-55926403 Setaria italica
Seita.9G536000 10.0kb downstream 10.0kb downstream 16779 true scaffold_9: 55926404-55943182 Setaria italica
Seita.9G536000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55933183-55943182 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175446 5267 Panicoideae View MSA
124580157 5269 Grass View MSA
122041546 5273 Angiosperm View MSA
123429045 5275 Viridiplantae View MSA
121347026 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.577        
cufflinks 8.003        
cufflinks 8.777        
cufflinks 7.183        
cufflinks 5.378       Low
cufflinks 8.906        
cufflinks 7.502        
cufflinks 8.328        
cufflinks 5.41       Low
cufflinks 8.069        
cufflinks 6.696        
cufflinks 7.552        
cufflinks 5.572       Low
cufflinks 5.946       Low
cufflinks 7.5        
cufflinks 10.934       High
cufflinks 7.524        
cufflinks 12.595     High High
cufflinks 5.683       Low
cufflinks 7.368        

0 Strain