Gene : Seita.9G536400 S. italica v2.2
Defline:  (1 of 3) PTHR13789//PTHR13789:SF247 - MONOOXYGENASE Genomic Order:  5364
Name:  ? Seita.9G536400 Secondary Identifier:  ? PAC:32691896
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G536400 0.5kb upstream 0.5kb upstream 5292 true scaffold_9: 55943940-55949231 Setaria italica
Seita.9G536400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55948732-55949231 Setaria italica
Seita.9G536400 0.5kb downstream 0.5kb downstream 5292 true scaffold_9: 55943440-55948731 Setaria italica
Seita.9G536400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55943440-55943939 Setaria italica
Seita.9G536400 1.0kb upstream 1.0kb upstream 5792 true scaffold_9: 55943940-55949731 Setaria italica
Seita.9G536400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55948732-55949731 Setaria italica
Seita.9G536400 1.0kb downstream 1.0kb downstream 5792 true scaffold_9: 55942940-55948731 Setaria italica
Seita.9G536400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55942940-55943939 Setaria italica
Seita.9G536400 2.0kb upstream 2.0kb upstream 6792 true scaffold_9: 55943940-55950731 Setaria italica
Seita.9G536400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55948732-55950731 Setaria italica
Seita.9G536400 2.0kb downstream 2.0kb downstream 6792 true scaffold_9: 55941940-55948731 Setaria italica
Seita.9G536400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55941940-55943939 Setaria italica
Seita.9G536400 5.0kb upstream 5.0kb upstream 9792 true scaffold_9: 55943940-55953731 Setaria italica
Seita.9G536400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55948732-55953731 Setaria italica
Seita.9G536400 5.0kb downstream 5.0kb downstream 9792 true scaffold_9: 55938940-55948731 Setaria italica
Seita.9G536400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55938940-55943939 Setaria italica
Seita.9G536400 10.0kb upstream 10.0kb upstream 14792 true scaffold_9: 55943940-55958731 Setaria italica
Seita.9G536400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55948732-55958731 Setaria italica
Seita.9G536400 10.0kb downstream 10.0kb downstream 14792 true scaffold_9: 55933940-55948731 Setaria italica
Seita.9G536400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55933940-55943939 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186027 5267 Panicoideae View MSA
124576354 5269 Grass View MSA
122051519 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121349985 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.245        
cufflinks 0.019     Low Low
cufflinks 0.008     Low Low
cufflinks 0.011     Low Low
cufflinks 0.016     Low Low
cufflinks 0.052     Low  
cufflinks 0.018     Low Low
cufflinks 0.045     Low  
cufflinks 0.035     Low  
cufflinks 0.93        
cufflinks 1.523       High
cufflinks 1.736       High
cufflinks 0.41        
cufflinks 0.278        
cufflinks 2.295       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.462       High
cufflinks 0.089     Low  
cufflinks 0.077     Low  
cufflinks 1.641       High

0 Strain