Gene : Seita.9G536900 S. italica v2.2
Defline:  (1 of 1) PTHR21600 - RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B Genomic Order:  5369
Name:  ? Seita.9G536900 Secondary Identifier:  ? PAC:32688723
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G536900 0.5kb upstream 0.5kb upstream 5441 true scaffold_9: 55979343-55984783 Setaria italica
Seita.9G536900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55984284-55984783 Setaria italica
Seita.9G536900 0.5kb downstream 0.5kb downstream 5441 true scaffold_9: 55978843-55984283 Setaria italica
Seita.9G536900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55978843-55979342 Setaria italica
Seita.9G536900 1.0kb upstream 1.0kb upstream 5941 true scaffold_9: 55979343-55985283 Setaria italica
Seita.9G536900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55984284-55985283 Setaria italica
Seita.9G536900 1.0kb downstream 1.0kb downstream 5941 true scaffold_9: 55978343-55984283 Setaria italica
Seita.9G536900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55978343-55979342 Setaria italica
Seita.9G536900 2.0kb upstream 2.0kb upstream 6941 true scaffold_9: 55979343-55986283 Setaria italica
Seita.9G536900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55984284-55986283 Setaria italica
Seita.9G536900 2.0kb downstream 2.0kb downstream 6941 true scaffold_9: 55977343-55984283 Setaria italica
Seita.9G536900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55977343-55979342 Setaria italica
Seita.9G536900 5.0kb upstream 5.0kb upstream 9941 true scaffold_9: 55979343-55989283 Setaria italica
Seita.9G536900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55984284-55989283 Setaria italica
Seita.9G536900 5.0kb downstream 5.0kb downstream 9941 true scaffold_9: 55974343-55984283 Setaria italica
Seita.9G536900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55974343-55979342 Setaria italica
Seita.9G536900 10.0kb upstream 10.0kb upstream 14941 true scaffold_9: 55979343-55994283 Setaria italica
Seita.9G536900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55984284-55994283 Setaria italica
Seita.9G536900 10.0kb downstream 10.0kb downstream 14941 true scaffold_9: 55969343-55984283 Setaria italica
Seita.9G536900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55969343-55979342 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184864 5267 Panicoideae View MSA
124572815 5269 Grass View MSA
122046867 5273 Angiosperm View MSA
121350601 5274 Embryophyte View MSA
123427017 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.565        
cufflinks 1.908        
cufflinks 3.196        
cufflinks 2.214        
cufflinks 3.219        
cufflinks 2.323        
cufflinks 3.703        
cufflinks 4.637       High
cufflinks 6.829       High
cufflinks 1.611        
cufflinks 1.84        
cufflinks 0.506       Low
cufflinks 0.465       Low
cufflinks 3.929        
cufflinks 0.636       Low
cufflinks 3.719        
cufflinks 0.709       Low
cufflinks 2.721        
cufflinks 1.3        
cufflinks 0.576       Low

0 Strain