Gene : Seita.9G537800 S. italica v2.2
Defline:  (1 of 1) PTHR19853 - WD REPEAT CONTAINING PROTEIN 3 WDR3 Genomic Order:  5378
Name:  ? Seita.9G537800 Secondary Identifier:  ? PAC:32689050
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G537800 0.5kb upstream 0.5kb upstream 6076 true scaffold_9: 56027412-56033487 Setaria italica
Seita.9G537800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56032988-56033487 Setaria italica
Seita.9G537800 0.5kb downstream 0.5kb downstream 6076 true scaffold_9: 56026912-56032987 Setaria italica
Seita.9G537800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56026912-56027411 Setaria italica
Seita.9G537800 1.0kb upstream 1.0kb upstream 6576 true scaffold_9: 56027412-56033987 Setaria italica
Seita.9G537800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56032988-56033987 Setaria italica
Seita.9G537800 1.0kb downstream 1.0kb downstream 6576 true scaffold_9: 56026412-56032987 Setaria italica
Seita.9G537800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56026412-56027411 Setaria italica
Seita.9G537800 2.0kb upstream 2.0kb upstream 7576 true scaffold_9: 56027412-56034987 Setaria italica
Seita.9G537800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56032988-56034987 Setaria italica
Seita.9G537800 2.0kb downstream 2.0kb downstream 7576 true scaffold_9: 56025412-56032987 Setaria italica
Seita.9G537800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56025412-56027411 Setaria italica
Seita.9G537800 5.0kb upstream 5.0kb upstream 10576 true scaffold_9: 56027412-56037987 Setaria italica
Seita.9G537800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56032988-56037987 Setaria italica
Seita.9G537800 5.0kb downstream 5.0kb downstream 10576 true scaffold_9: 56022412-56032987 Setaria italica
Seita.9G537800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56022412-56027411 Setaria italica
Seita.9G537800 10.0kb upstream 10.0kb upstream 15576 true scaffold_9: 56027412-56042987 Setaria italica
Seita.9G537800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56032988-56042987 Setaria italica
Seita.9G537800 10.0kb downstream 10.0kb downstream 15576 true scaffold_9: 56017412-56032987 Setaria italica
Seita.9G537800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56017412-56027411 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186500 5267 Panicoideae View MSA
124568699 5269 Grass View MSA
122046155 5273 Angiosperm View MSA
121346306 5274 Embryophyte View MSA
123424601 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.102        
cufflinks 12.263       High
cufflinks 6.064        
cufflinks 3.382       Low
cufflinks 4.353       Low
cufflinks 13.032       High
cufflinks 6.003        
cufflinks 6.566        
cufflinks 9.022        
cufflinks 5.463        
cufflinks 9.176        
cufflinks 9.118        
cufflinks 7.711        
cufflinks 7.347        
cufflinks 11.198       High
cufflinks 5.352        
cufflinks 11.163       High
cufflinks 7.281        
cufflinks 2.917       Low
cufflinks 11.314       High

0 Strain