Gene : Seita.9G537500 S. italica v2.2
Defline:  (1 of 1) PTHR22814//PTHR22814:SF143 - COPPER TRANSPORT PROTEIN ATOX1-RELATED Genomic Order:  5375
Name:  ? Seita.9G537500 Secondary Identifier:  ? PAC:32688341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G537500 0.5kb upstream 0.5kb upstream 2965 true scaffold_9: 56010495-56013459 Setaria italica
Seita.9G537500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56010495-56010994 Setaria italica
Seita.9G537500 0.5kb downstream 0.5kb downstream 2965 true scaffold_9: 56010995-56013959 Setaria italica
Seita.9G537500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56013460-56013959 Setaria italica
Seita.9G537500 1.0kb upstream 1.0kb upstream 3465 true scaffold_9: 56009995-56013459 Setaria italica
Seita.9G537500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56009995-56010994 Setaria italica
Seita.9G537500 1.0kb downstream 1.0kb downstream 3465 true scaffold_9: 56010995-56014459 Setaria italica
Seita.9G537500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56013460-56014459 Setaria italica
Seita.9G537500 2.0kb upstream 2.0kb upstream 4465 true scaffold_9: 56008995-56013459 Setaria italica
Seita.9G537500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56008995-56010994 Setaria italica
Seita.9G537500 2.0kb downstream 2.0kb downstream 4465 true scaffold_9: 56010995-56015459 Setaria italica
Seita.9G537500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56013460-56015459 Setaria italica
Seita.9G537500 5.0kb upstream 5.0kb upstream 7465 true scaffold_9: 56005995-56013459 Setaria italica
Seita.9G537500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56005995-56010994 Setaria italica
Seita.9G537500 5.0kb downstream 5.0kb downstream 7465 true scaffold_9: 56010995-56018459 Setaria italica
Seita.9G537500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56013460-56018459 Setaria italica
Seita.9G537500 10.0kb upstream 10.0kb upstream 12465 true scaffold_9: 56000995-56013459 Setaria italica
Seita.9G537500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56000995-56010994 Setaria italica
Seita.9G537500 10.0kb downstream 10.0kb downstream 12465 true scaffold_9: 56010995-56023459 Setaria italica
Seita.9G537500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56013460-56023459 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191763 5267 Panicoideae View MSA
124577164 5269 Grass View MSA
122045466 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.343        
cufflinks 1.651       Low
cufflinks 0.807       Low
cufflinks 2.235        
cufflinks 5.425        
cufflinks 1.758       Low
cufflinks 10.926       High
cufflinks 4.077        
cufflinks 6.357        
cufflinks 6.408        
cufflinks 5.834        
cufflinks 9.612       High
cufflinks 4.198        
cufflinks 8.672       High
cufflinks 3.577        
cufflinks 3.502        
cufflinks 3.258        
cufflinks 5.344        
cufflinks 1.934        
cufflinks 1.565       Low

0 Strain