Gene : Seita.9G543200 S. italica v2.2
Defline:  (1 of 2) PTHR10333 - INHIBITOR OF GROWTH PROTEIN Genomic Order:  5432
Name:  ? Seita.9G543200 Secondary Identifier:  ? PAC:32690952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G543200 0.5kb upstream 0.5kb upstream 4228 true scaffold_9: 56416378-56420605 Setaria italica
Seita.9G543200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56420106-56420605 Setaria italica
Seita.9G543200 0.5kb downstream 0.5kb downstream 4228 true scaffold_9: 56415878-56420105 Setaria italica
Seita.9G543200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56415878-56416377 Setaria italica
Seita.9G543200 1.0kb upstream 1.0kb upstream 4728 true scaffold_9: 56416378-56421105 Setaria italica
Seita.9G543200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56420106-56421105 Setaria italica
Seita.9G543200 1.0kb downstream 1.0kb downstream 4728 true scaffold_9: 56415378-56420105 Setaria italica
Seita.9G543200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56415378-56416377 Setaria italica
Seita.9G543200 2.0kb upstream 2.0kb upstream 5728 true scaffold_9: 56416378-56422105 Setaria italica
Seita.9G543200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56420106-56422105 Setaria italica
Seita.9G543200 2.0kb downstream 2.0kb downstream 5728 true scaffold_9: 56414378-56420105 Setaria italica
Seita.9G543200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56414378-56416377 Setaria italica
Seita.9G543200 5.0kb upstream 5.0kb upstream 8728 true scaffold_9: 56416378-56425105 Setaria italica
Seita.9G543200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56420106-56425105 Setaria italica
Seita.9G543200 5.0kb downstream 5.0kb downstream 8728 true scaffold_9: 56411378-56420105 Setaria italica
Seita.9G543200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56411378-56416377 Setaria italica
Seita.9G543200 10.0kb upstream 10.0kb upstream 13728 true scaffold_9: 56416378-56430105 Setaria italica
Seita.9G543200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56420106-56430105 Setaria italica
Seita.9G543200 10.0kb downstream 10.0kb downstream 13728 true scaffold_9: 56406378-56420105 Setaria italica
Seita.9G543200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56406378-56416377 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179345 5267 Panicoideae View MSA
124570129 5269 Grass View MSA
122046688 5273 Angiosperm View MSA
121343863 5274 Embryophyte View MSA
123426604 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.86        
cufflinks 3.831       High
cufflinks 3.079        
cufflinks 3.125        
cufflinks 2.476       Low
cufflinks 4.251       High
cufflinks 2.614        
cufflinks 2.591        
cufflinks 2.643        
cufflinks 2.643        
cufflinks 2.559        
cufflinks 3.35        
cufflinks 3.399       High
cufflinks 2.679        
cufflinks 2.684        
cufflinks 3.037        
cufflinks 2.989        
cufflinks 3.001        
cufflinks 2.481       Low
cufflinks 3.064        

0 Strain