Gene : Seita.9G543800 S. italica v2.2
Defline:  (1 of 1) PTHR24223:SF189 - ABC TRANSPORTER C FAMILY MEMBER 5 Genomic Order:  5438
Name:  ? Seita.9G543800 Secondary Identifier:  ? PAC:32686862
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G543800 0.5kb upstream 0.5kb upstream 7477 true scaffold_9: 56460990-56468466 Setaria italica
Seita.9G543800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56467967-56468466 Setaria italica
Seita.9G543800 0.5kb downstream 0.5kb downstream 7477 true scaffold_9: 56460490-56467966 Setaria italica
Seita.9G543800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56460490-56460989 Setaria italica
Seita.9G543800 1.0kb upstream 1.0kb upstream 7977 true scaffold_9: 56460990-56468966 Setaria italica
Seita.9G543800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56467967-56468966 Setaria italica
Seita.9G543800 1.0kb downstream 1.0kb downstream 7977 true scaffold_9: 56459990-56467966 Setaria italica
Seita.9G543800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56459990-56460989 Setaria italica
Seita.9G543800 2.0kb upstream 2.0kb upstream 8977 true scaffold_9: 56460990-56469966 Setaria italica
Seita.9G543800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56467967-56469966 Setaria italica
Seita.9G543800 2.0kb downstream 2.0kb downstream 8977 true scaffold_9: 56458990-56467966 Setaria italica
Seita.9G543800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56458990-56460989 Setaria italica
Seita.9G543800 5.0kb upstream 5.0kb upstream 11977 true scaffold_9: 56460990-56472966 Setaria italica
Seita.9G543800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56467967-56472966 Setaria italica
Seita.9G543800 5.0kb downstream 5.0kb downstream 11977 true scaffold_9: 56455990-56467966 Setaria italica
Seita.9G543800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56455990-56460989 Setaria italica
Seita.9G543800 10.0kb upstream 10.0kb upstream 16977 true scaffold_9: 56460990-56477966 Setaria italica
Seita.9G543800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56467967-56477966 Setaria italica
Seita.9G543800 10.0kb downstream 10.0kb downstream 16977 true scaffold_9: 56450990-56467966 Setaria italica
Seita.9G543800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56450990-56460989 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176872 5267 Panicoideae View MSA
124584149 5269 Grass View MSA
122042254 5273 Angiosperm View MSA
121346064 5274 Embryophyte View MSA
123380316 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.66     High  
cufflinks 19.568     High  
cufflinks 6.415       Low
cufflinks 8.394       Low
cufflinks 12.365     High  
cufflinks 18.835     High  
cufflinks 18.532     High  
cufflinks 16.33     High  
cufflinks 19.524     High  
cufflinks 17.135     High  
cufflinks 36.672     High High
cufflinks 36.437     High High
cufflinks 39.663     High High
cufflinks 10.576       Low
cufflinks 28.488     High  
cufflinks 16.848     High  
cufflinks 23.241     High  
cufflinks 22.88     High  
cufflinks 12.652     High  
cufflinks 27.896     High  

0 Strain