Gene : Seita.9G543000 S. italica v2.2
Defline:  (1 of 1) PTHR12195 - P53 INDUCIBLE PROTEIN-RELATED Genomic Order:  5430
Name:  ? Seita.9G543000 Secondary Identifier:  ? PAC:32687534
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G543000 0.5kb upstream 0.5kb upstream 23274 true scaffold_9: 56373063-56396336 Setaria italica
Seita.9G543000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56395837-56396336 Setaria italica
Seita.9G543000 0.5kb downstream 0.5kb downstream 23274 true scaffold_9: 56372563-56395836 Setaria italica
Seita.9G543000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56372563-56373062 Setaria italica
Seita.9G543000 1.0kb upstream 1.0kb upstream 23774 true scaffold_9: 56373063-56396836 Setaria italica
Seita.9G543000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56395837-56396836 Setaria italica
Seita.9G543000 1.0kb downstream 1.0kb downstream 23774 true scaffold_9: 56372063-56395836 Setaria italica
Seita.9G543000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56372063-56373062 Setaria italica
Seita.9G543000 2.0kb upstream 2.0kb upstream 24774 true scaffold_9: 56373063-56397836 Setaria italica
Seita.9G543000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56395837-56397836 Setaria italica
Seita.9G543000 2.0kb downstream 2.0kb downstream 24774 true scaffold_9: 56371063-56395836 Setaria italica
Seita.9G543000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56371063-56373062 Setaria italica
Seita.9G543000 5.0kb upstream 5.0kb upstream 27774 true scaffold_9: 56373063-56400836 Setaria italica
Seita.9G543000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56395837-56400836 Setaria italica
Seita.9G543000 5.0kb downstream 5.0kb downstream 27774 true scaffold_9: 56368063-56395836 Setaria italica
Seita.9G543000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56368063-56373062 Setaria italica
Seita.9G543000 10.0kb upstream 10.0kb upstream 32774 true scaffold_9: 56373063-56405836 Setaria italica
Seita.9G543000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56395837-56405836 Setaria italica
Seita.9G543000 10.0kb downstream 10.0kb downstream 32774 true scaffold_9: 56363063-56395836 Setaria italica
Seita.9G543000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56363063-56373062 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047332 5273 Angiosperm View MSA
122190888 5267 Panicoideae View MSA
124571912 5269 Grass View MSA
121351207 5274 Embryophyte View MSA
123426816 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.324       High
cufflinks 13.822     High High
cufflinks 2.682       Low
cufflinks 2.512       Low
cufflinks 2.796        
cufflinks 12.614       High
cufflinks 7.899        
cufflinks 5.171        
cufflinks 6.334        
cufflinks 4.012        
cufflinks 9.123        
cufflinks 4.103        
cufflinks 6.585        
cufflinks 1.593       Low
cufflinks 7.375        
cufflinks 7.713        
cufflinks 4.569        
cufflinks 5.805        
cufflinks 1.416       Low
cufflinks 5.51        

0 Strain