Gene : Seita.9G547500 S. italica v2.2
Defline:  (1 of 5) PF11833 - Protein of unknown function (DUF3353) (DUF3353) Genomic Order:  5475
Name:  ? Seita.9G547500 Secondary Identifier:  ? PAC:32688910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G547500 0.5kb upstream 0.5kb upstream 3711 true scaffold_9: 56722073-56725783 Setaria italica
Seita.9G547500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56722073-56722572 Setaria italica
Seita.9G547500 0.5kb downstream 0.5kb downstream 3711 true scaffold_9: 56722573-56726283 Setaria italica
Seita.9G547500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56725784-56726283 Setaria italica
Seita.9G547500 1.0kb upstream 1.0kb upstream 4211 true scaffold_9: 56721573-56725783 Setaria italica
Seita.9G547500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56721573-56722572 Setaria italica
Seita.9G547500 1.0kb downstream 1.0kb downstream 4211 true scaffold_9: 56722573-56726783 Setaria italica
Seita.9G547500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56725784-56726783 Setaria italica
Seita.9G547500 2.0kb upstream 2.0kb upstream 5211 true scaffold_9: 56720573-56725783 Setaria italica
Seita.9G547500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56720573-56722572 Setaria italica
Seita.9G547500 2.0kb downstream 2.0kb downstream 5211 true scaffold_9: 56722573-56727783 Setaria italica
Seita.9G547500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56725784-56727783 Setaria italica
Seita.9G547500 5.0kb upstream 5.0kb upstream 8211 true scaffold_9: 56717573-56725783 Setaria italica
Seita.9G547500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56717573-56722572 Setaria italica
Seita.9G547500 5.0kb downstream 5.0kb downstream 8211 true scaffold_9: 56722573-56730783 Setaria italica
Seita.9G547500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56725784-56730783 Setaria italica
Seita.9G547500 10.0kb upstream 10.0kb upstream 13211 true scaffold_9: 56712573-56725783 Setaria italica
Seita.9G547500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56712573-56722572 Setaria italica
Seita.9G547500 10.0kb downstream 10.0kb downstream 13211 true scaffold_9: 56722573-56735783 Setaria italica
Seita.9G547500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56725784-56735783 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190558 5267 Panicoideae View MSA
124573022 5269 Grass View MSA
122047398 5273 Angiosperm View MSA
121344434 5274 Embryophyte View MSA
123428691 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.119       Low
cufflinks 4.738       Low
cufflinks 60.742     High High
cufflinks 49.768     High High
cufflinks 34.014     High  
cufflinks 4.763       Low
cufflinks 17.77     High  
cufflinks 31.012     High  
cufflinks 15.573     High  
cufflinks 7.296        
cufflinks 4.178       Low
cufflinks 8.453        
cufflinks 9.631        
cufflinks 51.954     High High
cufflinks 6.107        
cufflinks 20.008     High  
cufflinks 5.601        
cufflinks 13.507     High  
cufflinks 54.541     High High
cufflinks 5.422        

0 Strain