Gene : Seita.9G547900 S. italica v2.2
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  5479
Name:  ? Seita.9G547900 Secondary Identifier:  ? PAC:32687109
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYOXYLATE-BYPASS Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G547900 0.5kb upstream 0.5kb upstream 7671 true scaffold_9: 56749344-56757014 Setaria italica
Seita.9G547900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56749344-56749843 Setaria italica
Seita.9G547900 0.5kb downstream 0.5kb downstream 7671 true scaffold_9: 56749844-56757514 Setaria italica
Seita.9G547900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56757015-56757514 Setaria italica
Seita.9G547900 1.0kb upstream 1.0kb upstream 8171 true scaffold_9: 56748844-56757014 Setaria italica
Seita.9G547900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56748844-56749843 Setaria italica
Seita.9G547900 1.0kb downstream 1.0kb downstream 8171 true scaffold_9: 56749844-56758014 Setaria italica
Seita.9G547900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56757015-56758014 Setaria italica
Seita.9G547900 2.0kb upstream 2.0kb upstream 9171 true scaffold_9: 56747844-56757014 Setaria italica
Seita.9G547900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56747844-56749843 Setaria italica
Seita.9G547900 2.0kb downstream 2.0kb downstream 9171 true scaffold_9: 56749844-56759014 Setaria italica
Seita.9G547900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56757015-56759014 Setaria italica
Seita.9G547900 5.0kb upstream 5.0kb upstream 12171 true scaffold_9: 56744844-56757014 Setaria italica
Seita.9G547900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56744844-56749843 Setaria italica
Seita.9G547900 5.0kb downstream 5.0kb downstream 12171 true scaffold_9: 56749844-56762014 Setaria italica
Seita.9G547900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56757015-56762014 Setaria italica
Seita.9G547900 10.0kb upstream 10.0kb upstream 17171 true scaffold_9: 56739844-56757014 Setaria italica
Seita.9G547900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56739844-56749843 Setaria italica
Seita.9G547900 10.0kb downstream 10.0kb downstream 17171 true scaffold_9: 56749844-56767014 Setaria italica
Seita.9G547900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56757015-56767014 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122025860 5273 Angiosperm View MSA
122177032 5267 Panicoideae View MSA
124588210 5269 Grass View MSA
121295930 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.084     High  
cufflinks 52.588     High  
cufflinks 50.142     High  
cufflinks 43.374     High  
cufflinks 63.871     High  
cufflinks 51.325     High  
cufflinks 53.201     High  
cufflinks 59.235     High  
cufflinks 75.92     High  
cufflinks 64.198     High  
cufflinks 88.816     High  
cufflinks 97.697     High  
cufflinks 89.962     High  
cufflinks 66.544     High  
cufflinks 142.408     High High
cufflinks 29.408     High Low
cufflinks 140.198     High High
cufflinks 25.908     High Low
cufflinks 49.319     High  
cufflinks 114.507     High High

0 Strain