Gene : Seita.9G552700 S. italica v2.2
Defline:  (1 of 2) PTHR10677 - UBIQUILIN Genomic Order:  5527
Name:  ? Seita.9G552700 Secondary Identifier:  ? PAC:32688990
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G552700 0.5kb upstream 0.5kb upstream 5165 true scaffold_9: 57020064-57025228 Setaria italica
Seita.9G552700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57020064-57020563 Setaria italica
Seita.9G552700 0.5kb downstream 0.5kb downstream 5165 true scaffold_9: 57020564-57025728 Setaria italica
Seita.9G552700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57025229-57025728 Setaria italica
Seita.9G552700 1.0kb upstream 1.0kb upstream 5665 true scaffold_9: 57019564-57025228 Setaria italica
Seita.9G552700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57019564-57020563 Setaria italica
Seita.9G552700 1.0kb downstream 1.0kb downstream 5665 true scaffold_9: 57020564-57026228 Setaria italica
Seita.9G552700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57025229-57026228 Setaria italica
Seita.9G552700 2.0kb upstream 2.0kb upstream 6665 true scaffold_9: 57018564-57025228 Setaria italica
Seita.9G552700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57018564-57020563 Setaria italica
Seita.9G552700 2.0kb downstream 2.0kb downstream 6665 true scaffold_9: 57020564-57027228 Setaria italica
Seita.9G552700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57025229-57027228 Setaria italica
Seita.9G552700 5.0kb upstream 5.0kb upstream 9665 true scaffold_9: 57015564-57025228 Setaria italica
Seita.9G552700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57015564-57020563 Setaria italica
Seita.9G552700 5.0kb downstream 5.0kb downstream 9665 true scaffold_9: 57020564-57030228 Setaria italica
Seita.9G552700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57025229-57030228 Setaria italica
Seita.9G552700 10.0kb upstream 10.0kb upstream 14665 true scaffold_9: 57010564-57025228 Setaria italica
Seita.9G552700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57010564-57020563 Setaria italica
Seita.9G552700 10.0kb downstream 10.0kb downstream 14665 true scaffold_9: 57020564-57035228 Setaria italica
Seita.9G552700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57025229-57035228 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178835 5267 Panicoideae View MSA
124588413 5269 Grass View MSA
122045847 5273 Angiosperm View MSA
121343962 5274 Embryophyte View MSA
123426424 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.74     High  
cufflinks 29.314     High  
cufflinks 21.64     High  
cufflinks 25.712     High  
cufflinks 19.213     High Low
cufflinks 27.992     High  
cufflinks 21.105     High  
cufflinks 18.937     High Low
cufflinks 14.894     High Low
cufflinks 27.95     High  
cufflinks 27.509     High  
cufflinks 33.543     High High
cufflinks 34.818     High High
cufflinks 17.947     High Low
cufflinks 30.103     High  
cufflinks 21.09     High  
cufflinks 26.328     High  
cufflinks 36.145     High High
cufflinks 24.943     High  
cufflinks 25.497     High  

0 Strain