Gene : Seita.9G552000 S. italica v2.2
Defline:  (1 of 1) PTHR24096:SF186 - 4-COUMARATE--COA LIGASE-LIKE 2-RELATED Genomic Order:  5520
Name:  ? Seita.9G552000 Secondary Identifier:  ? PAC:32691691
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G552000 0.5kb upstream 0.5kb upstream 4378 true scaffold_9: 56988663-56993040 Setaria italica
Seita.9G552000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56992541-56993040 Setaria italica
Seita.9G552000 0.5kb downstream 0.5kb downstream 4378 true scaffold_9: 56988163-56992540 Setaria italica
Seita.9G552000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56988163-56988662 Setaria italica
Seita.9G552000 1.0kb upstream 1.0kb upstream 4878 true scaffold_9: 56988663-56993540 Setaria italica
Seita.9G552000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56992541-56993540 Setaria italica
Seita.9G552000 1.0kb downstream 1.0kb downstream 4878 true scaffold_9: 56987663-56992540 Setaria italica
Seita.9G552000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56987663-56988662 Setaria italica
Seita.9G552000 2.0kb upstream 2.0kb upstream 5878 true scaffold_9: 56988663-56994540 Setaria italica
Seita.9G552000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56992541-56994540 Setaria italica
Seita.9G552000 2.0kb downstream 2.0kb downstream 5878 true scaffold_9: 56986663-56992540 Setaria italica
Seita.9G552000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56986663-56988662 Setaria italica
Seita.9G552000 5.0kb upstream 5.0kb upstream 8878 true scaffold_9: 56988663-56997540 Setaria italica
Seita.9G552000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56992541-56997540 Setaria italica
Seita.9G552000 5.0kb downstream 5.0kb downstream 8878 true scaffold_9: 56983663-56992540 Setaria italica
Seita.9G552000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56983663-56988662 Setaria italica
Seita.9G552000 10.0kb upstream 10.0kb upstream 13878 true scaffold_9: 56988663-57002540 Setaria italica
Seita.9G552000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56992541-57002540 Setaria italica
Seita.9G552000 10.0kb downstream 10.0kb downstream 13878 true scaffold_9: 56978663-56992540 Setaria italica
Seita.9G552000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56978663-56988662 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179206 5267 Panicoideae View MSA
124576093 5269 Grass View MSA
122043430 5273 Angiosperm View MSA
121350022 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.424        
cufflinks 3.276        
cufflinks 1.521       Low
cufflinks 1.843       Low
cufflinks 3.711        
cufflinks 3.097        
cufflinks 4.116        
cufflinks 5.501        
cufflinks 5.977        
cufflinks 13.714       High
cufflinks 10.392        
cufflinks 8.671        
cufflinks 6.7        
cufflinks 7.712        
cufflinks 10.163        
cufflinks 1.613       Low
cufflinks 11.017       High
cufflinks 5.732        
cufflinks 2.701        
cufflinks 13.683       High

0 Strain