Gene : Seita.9G554800 S. italica v2.2
Defline:  (1 of 1) PTHR23355:SF35 - EXOSOME COMPLEX EXONUCLEASE RRP44 Genomic Order:  5548
Name:  ? Seita.9G554800 Secondary Identifier:  ? PAC:32690698
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G554800 0.5kb upstream 0.5kb upstream 8062 true scaffold_9: 57166499-57174560 Setaria italica
Seita.9G554800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57166499-57166998 Setaria italica
Seita.9G554800 0.5kb downstream 0.5kb downstream 8062 true scaffold_9: 57166999-57175060 Setaria italica
Seita.9G554800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57174561-57175060 Setaria italica
Seita.9G554800 1.0kb upstream 1.0kb upstream 8562 true scaffold_9: 57165999-57174560 Setaria italica
Seita.9G554800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57165999-57166998 Setaria italica
Seita.9G554800 1.0kb downstream 1.0kb downstream 8562 true scaffold_9: 57166999-57175560 Setaria italica
Seita.9G554800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57174561-57175560 Setaria italica
Seita.9G554800 2.0kb upstream 2.0kb upstream 9562 true scaffold_9: 57164999-57174560 Setaria italica
Seita.9G554800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57164999-57166998 Setaria italica
Seita.9G554800 2.0kb downstream 2.0kb downstream 9562 true scaffold_9: 57166999-57176560 Setaria italica
Seita.9G554800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57174561-57176560 Setaria italica
Seita.9G554800 5.0kb upstream 5.0kb upstream 12562 true scaffold_9: 57161999-57174560 Setaria italica
Seita.9G554800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57161999-57166998 Setaria italica
Seita.9G554800 5.0kb downstream 5.0kb downstream 12562 true scaffold_9: 57166999-57179560 Setaria italica
Seita.9G554800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57174561-57179560 Setaria italica
Seita.9G554800 10.0kb upstream 10.0kb upstream 17562 true scaffold_9: 57156999-57174560 Setaria italica
Seita.9G554800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57156999-57166998 Setaria italica
Seita.9G554800 10.0kb downstream 10.0kb downstream 17562 true scaffold_9: 57166999-57184560 Setaria italica
Seita.9G554800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57174561-57184560 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191801 5267 Panicoideae View MSA
124569548 5269 Grass View MSA
122043257 5273 Angiosperm View MSA
121346198 5274 Embryophyte View MSA
123425296 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.226        
cufflinks 5.126       High
cufflinks 5.43       High
cufflinks 4.942       High
cufflinks 3.502        
cufflinks 4.781        
cufflinks 3.6        
cufflinks 3.769        
cufflinks 3.642        
cufflinks 2.333       Low
cufflinks 3.144        
cufflinks 3.802        
cufflinks 2.653       Low
cufflinks 4.796        
cufflinks 3.901        
cufflinks 3.678        
cufflinks 3.331        
cufflinks 5.509       High
cufflinks 4.638        
cufflinks 3.593        

0 Strain