Gene : Seita.9G479500 S. italica v2.2
Defline:  (1 of 2) PTHR10261 - COATOMER SUBUNIT GAMMA Genomic Order:  4795
Name:  ? Seita.9G479500 Secondary Identifier:  ? PAC:32692223
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G479500 0.5kb upstream 0.5kb upstream 7932 true scaffold_9: 51930265-51938196 Setaria italica
Seita.9G479500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51930265-51930764 Setaria italica
Seita.9G479500 0.5kb downstream 0.5kb downstream 7932 true scaffold_9: 51930765-51938696 Setaria italica
Seita.9G479500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51938197-51938696 Setaria italica
Seita.9G479500 1.0kb upstream 1.0kb upstream 8432 true scaffold_9: 51929765-51938196 Setaria italica
Seita.9G479500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51929765-51930764 Setaria italica
Seita.9G479500 1.0kb downstream 1.0kb downstream 8432 true scaffold_9: 51930765-51939196 Setaria italica
Seita.9G479500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51938197-51939196 Setaria italica
Seita.9G479500 2.0kb upstream 2.0kb upstream 9432 true scaffold_9: 51928765-51938196 Setaria italica
Seita.9G479500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51928765-51930764 Setaria italica
Seita.9G479500 2.0kb downstream 2.0kb downstream 9432 true scaffold_9: 51930765-51940196 Setaria italica
Seita.9G479500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51938197-51940196 Setaria italica
Seita.9G479500 5.0kb upstream 5.0kb upstream 12432 true scaffold_9: 51925765-51938196 Setaria italica
Seita.9G479500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51925765-51930764 Setaria italica
Seita.9G479500 5.0kb downstream 5.0kb downstream 12432 true scaffold_9: 51930765-51943196 Setaria italica
Seita.9G479500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51938197-51943196 Setaria italica
Seita.9G479500 10.0kb upstream 10.0kb upstream 17432 true scaffold_9: 51920765-51938196 Setaria italica
Seita.9G479500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51920765-51930764 Setaria italica
Seita.9G479500 10.0kb downstream 10.0kb downstream 17432 true scaffold_9: 51930765-51948196 Setaria italica
Seita.9G479500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51938197-51948196 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992599 5273 Angiosperm View MSA
122180468 5267 Panicoideae View MSA
124570220 5269 Grass View MSA
121262941 5274 Embryophyte View MSA
123301556 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.81     High High
cufflinks 31.79     High High
cufflinks 11.719     High  
cufflinks 7.338       Low
cufflinks 5.422       Low
cufflinks 28.384     High High
cufflinks 18.063     High  
cufflinks 10.988        
cufflinks 10.75        
cufflinks 11.926        
cufflinks 26.036     High  
cufflinks 24.33     High  
cufflinks 19.09     High  
cufflinks 15.574     High  
cufflinks 27.61     High  
cufflinks 15.897     High  
cufflinks 21.488     High  
cufflinks 24.593     High  
cufflinks 9.173       Low
cufflinks 25.199     High  

0 Strain