Gene : Seita.9G479700 S. italica v2.2
Defline:  (1 of 2) PTHR10133:SF22 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  4797
Name:  ? Seita.9G479700 Secondary Identifier:  ? PAC:32692118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G479700 0.5kb upstream 0.5kb upstream 10747 true scaffold_9: 51941294-51952040 Setaria italica
Seita.9G479700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51941294-51941793 Setaria italica
Seita.9G479700 0.5kb downstream 0.5kb downstream 10747 true scaffold_9: 51941794-51952540 Setaria italica
Seita.9G479700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51952041-51952540 Setaria italica
Seita.9G479700 1.0kb upstream 1.0kb upstream 11247 true scaffold_9: 51940794-51952040 Setaria italica
Seita.9G479700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51940794-51941793 Setaria italica
Seita.9G479700 1.0kb downstream 1.0kb downstream 11247 true scaffold_9: 51941794-51953040 Setaria italica
Seita.9G479700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51952041-51953040 Setaria italica
Seita.9G479700 2.0kb upstream 2.0kb upstream 12247 true scaffold_9: 51939794-51952040 Setaria italica
Seita.9G479700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51939794-51941793 Setaria italica
Seita.9G479700 2.0kb downstream 2.0kb downstream 12247 true scaffold_9: 51941794-51954040 Setaria italica
Seita.9G479700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51952041-51954040 Setaria italica
Seita.9G479700 5.0kb upstream 5.0kb upstream 15247 true scaffold_9: 51936794-51952040 Setaria italica
Seita.9G479700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51936794-51941793 Setaria italica
Seita.9G479700 5.0kb downstream 5.0kb downstream 15247 true scaffold_9: 51941794-51957040 Setaria italica
Seita.9G479700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51952041-51957040 Setaria italica
Seita.9G479700 10.0kb upstream 10.0kb upstream 20247 true scaffold_9: 51931794-51952040 Setaria italica
Seita.9G479700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51931794-51941793 Setaria italica
Seita.9G479700 10.0kb downstream 10.0kb downstream 20247 true scaffold_9: 51941794-51962040 Setaria italica
Seita.9G479700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51952041-51962040 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181044 5267 Panicoideae View MSA
124578076 5269 Grass View MSA
122042646 5273 Angiosperm View MSA
121346899 5274 Embryophyte View MSA
123425715 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.436        
cufflinks 0.634       High
cufflinks 0.267        
cufflinks 0.223       Low
cufflinks 0.323        
cufflinks 0.634       High
cufflinks 0.605       High
cufflinks 0.551        
cufflinks 0.741       High
cufflinks 0.456        
cufflinks 0.379        
cufflinks 0.255       Low
cufflinks 0.289        
cufflinks 0.387        
cufflinks 0.324        
cufflinks 0.624       High
cufflinks 0.342        
cufflinks 0.332        
cufflinks 0.211       Low
cufflinks 0.304        

0 Strain