Gene : Seita.9G484200 S. italica v2.2
Defline:  (1 of 1) PTHR13405:SF11 - NUCLEAR PORE COMPLEX PROTEIN NUP133 Genomic Order:  4842
Name:  ? Seita.9G484200 Secondary Identifier:  ? PAC:32692996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G484200 0.5kb upstream 0.5kb upstream 8476 true scaffold_9: 52426252-52434727 Setaria italica
Seita.9G484200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52434228-52434727 Setaria italica
Seita.9G484200 0.5kb downstream 0.5kb downstream 8476 true scaffold_9: 52425752-52434227 Setaria italica
Seita.9G484200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52425752-52426251 Setaria italica
Seita.9G484200 1.0kb upstream 1.0kb upstream 8976 true scaffold_9: 52426252-52435227 Setaria italica
Seita.9G484200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52434228-52435227 Setaria italica
Seita.9G484200 1.0kb downstream 1.0kb downstream 8976 true scaffold_9: 52425252-52434227 Setaria italica
Seita.9G484200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52425252-52426251 Setaria italica
Seita.9G484200 2.0kb upstream 2.0kb upstream 9976 true scaffold_9: 52426252-52436227 Setaria italica
Seita.9G484200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52434228-52436227 Setaria italica
Seita.9G484200 2.0kb downstream 2.0kb downstream 9976 true scaffold_9: 52424252-52434227 Setaria italica
Seita.9G484200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52424252-52426251 Setaria italica
Seita.9G484200 5.0kb upstream 5.0kb upstream 12976 true scaffold_9: 52426252-52439227 Setaria italica
Seita.9G484200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52434228-52439227 Setaria italica
Seita.9G484200 5.0kb downstream 5.0kb downstream 12976 true scaffold_9: 52421252-52434227 Setaria italica
Seita.9G484200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52421252-52426251 Setaria italica
Seita.9G484200 10.0kb upstream 10.0kb upstream 17976 true scaffold_9: 52426252-52444227 Setaria italica
Seita.9G484200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52434228-52444227 Setaria italica
Seita.9G484200 10.0kb downstream 10.0kb downstream 17976 true scaffold_9: 52416252-52434227 Setaria italica
Seita.9G484200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52416252-52426251 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196328 5267 Panicoideae View MSA
124577192 5269 Grass View MSA
122045150 5273 Angiosperm View MSA
121345241 5274 Embryophyte View MSA
123424593 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.539       High
cufflinks 5.803       High
cufflinks 2.489        
cufflinks 1.747       Low
cufflinks 2.06        
cufflinks 6.015       High
cufflinks 2.669        
cufflinks 2.768        
cufflinks 3.692        
cufflinks 1.763       Low
cufflinks 3.895        
cufflinks 3.358        
cufflinks 3.156        
cufflinks 2.318        
cufflinks 3.695        
cufflinks 2.193        
cufflinks 3.271        
cufflinks 2.373        
cufflinks 1.084       Low
cufflinks 3.797        

0 Strain