Gene : Seita.9G484900 S. italica v2.2
Defline:  (1 of 2) PTHR10788:SF48 - ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 Genomic Order:  4849
Name:  ? Seita.9G484900 Secondary Identifier:  ? PAC:32691913
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G484900 0.5kb upstream 0.5kb upstream 4862 true scaffold_9: 52500815-52505676 Setaria italica
Seita.9G484900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52500815-52501314 Setaria italica
Seita.9G484900 0.5kb downstream 0.5kb downstream 4862 true scaffold_9: 52501315-52506176 Setaria italica
Seita.9G484900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52505677-52506176 Setaria italica
Seita.9G484900 1.0kb upstream 1.0kb upstream 5362 true scaffold_9: 52500315-52505676 Setaria italica
Seita.9G484900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52500315-52501314 Setaria italica
Seita.9G484900 1.0kb downstream 1.0kb downstream 5362 true scaffold_9: 52501315-52506676 Setaria italica
Seita.9G484900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52505677-52506676 Setaria italica
Seita.9G484900 2.0kb upstream 2.0kb upstream 6362 true scaffold_9: 52499315-52505676 Setaria italica
Seita.9G484900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52499315-52501314 Setaria italica
Seita.9G484900 2.0kb downstream 2.0kb downstream 6362 true scaffold_9: 52501315-52507676 Setaria italica
Seita.9G484900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52505677-52507676 Setaria italica
Seita.9G484900 5.0kb upstream 5.0kb upstream 9362 true scaffold_9: 52496315-52505676 Setaria italica
Seita.9G484900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52496315-52501314 Setaria italica
Seita.9G484900 5.0kb downstream 5.0kb downstream 9362 true scaffold_9: 52501315-52510676 Setaria italica
Seita.9G484900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52505677-52510676 Setaria italica
Seita.9G484900 10.0kb upstream 10.0kb upstream 14362 true scaffold_9: 52491315-52505676 Setaria italica
Seita.9G484900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52491315-52501314 Setaria italica
Seita.9G484900 10.0kb downstream 10.0kb downstream 14362 true scaffold_9: 52501315-52515676 Setaria italica
Seita.9G484900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52505677-52515676 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184823 5267 Panicoideae View MSA
124572000 5269 Grass View MSA
122049755 5273 Angiosperm View MSA
121348711 5274 Embryophyte View MSA
123425695 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.21     High  
cufflinks 67.669     High High
cufflinks 3.23       Low
cufflinks 1.515       Low
cufflinks 3.182       Low
cufflinks 61.89     High High
cufflinks 27.435     High  
cufflinks 12.493        
cufflinks 9.02        
cufflinks 20.644     High  
cufflinks 36.935     High  
cufflinks 14.504     High  
cufflinks 34.44     High  
cufflinks 15.582     High  
cufflinks 47.911     High High
cufflinks 16.985     High  
cufflinks 19.686     High  
cufflinks 9.236        
cufflinks 4.25       Low
cufflinks 32.007     High  

0 Strain