Gene : Seita.9G486700 S. italica v2.2
Defline:  (1 of 1) PTHR15454 - NISCHARIN RELATED Genomic Order:  4867
Name:  ? Seita.9G486700 Secondary Identifier:  ? PAC:32691457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G486700 0.5kb upstream 0.5kb upstream 10408 true scaffold_9: 52656518-52666925 Setaria italica
Seita.9G486700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52656518-52657017 Setaria italica
Seita.9G486700 0.5kb downstream 0.5kb downstream 10408 true scaffold_9: 52657018-52667425 Setaria italica
Seita.9G486700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52666926-52667425 Setaria italica
Seita.9G486700 1.0kb upstream 1.0kb upstream 10908 true scaffold_9: 52656018-52666925 Setaria italica
Seita.9G486700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52656018-52657017 Setaria italica
Seita.9G486700 1.0kb downstream 1.0kb downstream 10908 true scaffold_9: 52657018-52667925 Setaria italica
Seita.9G486700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52666926-52667925 Setaria italica
Seita.9G486700 2.0kb upstream 2.0kb upstream 11908 true scaffold_9: 52655018-52666925 Setaria italica
Seita.9G486700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52655018-52657017 Setaria italica
Seita.9G486700 2.0kb downstream 2.0kb downstream 11908 true scaffold_9: 52657018-52668925 Setaria italica
Seita.9G486700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52666926-52668925 Setaria italica
Seita.9G486700 5.0kb upstream 5.0kb upstream 14908 true scaffold_9: 52652018-52666925 Setaria italica
Seita.9G486700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52652018-52657017 Setaria italica
Seita.9G486700 5.0kb downstream 5.0kb downstream 14908 true scaffold_9: 52657018-52671925 Setaria italica
Seita.9G486700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52666926-52671925 Setaria italica
Seita.9G486700 10.0kb upstream 10.0kb upstream 19908 true scaffold_9: 52647018-52666925 Setaria italica
Seita.9G486700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52647018-52657017 Setaria italica
Seita.9G486700 10.0kb downstream 10.0kb downstream 19908 true scaffold_9: 52657018-52676925 Setaria italica
Seita.9G486700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52666926-52676925 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179586 5267 Panicoideae View MSA
124570012 5269 Grass View MSA
122043032 5273 Angiosperm View MSA
121348804 5274 Embryophyte View MSA
123427587 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.5       High
cufflinks 1.728        
cufflinks 2.154        
cufflinks 1.311       Low
cufflinks 1.502        
cufflinks 1.686        
cufflinks 2.829        
cufflinks 1.204       Low
cufflinks 1.7        
cufflinks 1.469       Low
cufflinks 2.309        
cufflinks 2.696        
cufflinks 2.334        
cufflinks 2.443        
cufflinks 2.46        
cufflinks 3.092       High
cufflinks 1.812        
cufflinks 5.112       High
cufflinks 1.874        
cufflinks 1.863        

0 Strain