Gene : Seita.9G485400 S. italica v2.2
Defline:  (1 of 2) PTHR16023 - TAX1 BINDING PROTEIN-RELATED Genomic Order:  4854
Name:  ? Seita.9G485400 Secondary Identifier:  ? PAC:32693161
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G485400 0.5kb upstream 0.5kb upstream 8123 true scaffold_9: 52545040-52553162 Setaria italica
Seita.9G485400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52545040-52545539 Setaria italica
Seita.9G485400 0.5kb downstream 0.5kb downstream 8123 true scaffold_9: 52545540-52553662 Setaria italica
Seita.9G485400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52553163-52553662 Setaria italica
Seita.9G485400 1.0kb upstream 1.0kb upstream 8623 true scaffold_9: 52544540-52553162 Setaria italica
Seita.9G485400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52544540-52545539 Setaria italica
Seita.9G485400 1.0kb downstream 1.0kb downstream 8623 true scaffold_9: 52545540-52554162 Setaria italica
Seita.9G485400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52553163-52554162 Setaria italica
Seita.9G485400 2.0kb upstream 2.0kb upstream 9623 true scaffold_9: 52543540-52553162 Setaria italica
Seita.9G485400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52543540-52545539 Setaria italica
Seita.9G485400 2.0kb downstream 2.0kb downstream 9623 true scaffold_9: 52545540-52555162 Setaria italica
Seita.9G485400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52553163-52555162 Setaria italica
Seita.9G485400 5.0kb upstream 5.0kb upstream 12623 true scaffold_9: 52540540-52553162 Setaria italica
Seita.9G485400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52540540-52545539 Setaria italica
Seita.9G485400 5.0kb downstream 5.0kb downstream 12623 true scaffold_9: 52545540-52558162 Setaria italica
Seita.9G485400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52553163-52558162 Setaria italica
Seita.9G485400 10.0kb upstream 10.0kb upstream 17623 true scaffold_9: 52535540-52553162 Setaria italica
Seita.9G485400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52535540-52545539 Setaria italica
Seita.9G485400 10.0kb downstream 10.0kb downstream 17623 true scaffold_9: 52545540-52563162 Setaria italica
Seita.9G485400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52553163-52563162 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188907 5267 Panicoideae View MSA
124577234 5269 Grass View MSA
122047421 5273 Angiosperm View MSA
121346915 5274 Embryophyte View MSA
123428205 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.356     High  
cufflinks 9.556        
cufflinks 19.654     High High
cufflinks 19.423     High High
cufflinks 12.274     High  
cufflinks 9.164       Low
cufflinks 12.431        
cufflinks 8.262       Low
cufflinks 8.952       Low
cufflinks 8.846       Low
cufflinks 13.14        
cufflinks 13.989     High  
cufflinks 13.232        
cufflinks 12.351        
cufflinks 10.508        
cufflinks 15.701     High  
cufflinks 10.696        
cufflinks 22.679     High High
cufflinks 15.05     High  
cufflinks 10.301        

0 Strain