Gene : Seita.9G485600 S. italica v2.2
Defline:  (1 of 1) PTHR20852//PTHR20852:SF61 - GLUTAMINE SYNTHETASE Genomic Order:  4856
Name:  ? Seita.9G485600 Secondary Identifier:  ? PAC:32691496
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLNSYN-PWY Setaria italica pathologic  
Sitalica PWY-3282 Setaria italica pathologic  
Sitalica PWY-381 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  
Sitalica PWY-6963 Setaria italica pathologic  
Sitalica PWY-6964 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G485600 0.5kb upstream 0.5kb upstream 3549 true scaffold_9: 52567917-52571465 Setaria italica
Seita.9G485600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52567917-52568416 Setaria italica
Seita.9G485600 0.5kb downstream 0.5kb downstream 3549 true scaffold_9: 52568417-52571965 Setaria italica
Seita.9G485600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52571466-52571965 Setaria italica
Seita.9G485600 1.0kb upstream 1.0kb upstream 4049 true scaffold_9: 52567417-52571465 Setaria italica
Seita.9G485600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52567417-52568416 Setaria italica
Seita.9G485600 1.0kb downstream 1.0kb downstream 4049 true scaffold_9: 52568417-52572465 Setaria italica
Seita.9G485600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52571466-52572465 Setaria italica
Seita.9G485600 2.0kb upstream 2.0kb upstream 5049 true scaffold_9: 52566417-52571465 Setaria italica
Seita.9G485600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52566417-52568416 Setaria italica
Seita.9G485600 2.0kb downstream 2.0kb downstream 5049 true scaffold_9: 52568417-52573465 Setaria italica
Seita.9G485600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52571466-52573465 Setaria italica
Seita.9G485600 5.0kb upstream 5.0kb upstream 8049 true scaffold_9: 52563417-52571465 Setaria italica
Seita.9G485600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52563417-52568416 Setaria italica
Seita.9G485600 5.0kb downstream 5.0kb downstream 8049 true scaffold_9: 52568417-52576465 Setaria italica
Seita.9G485600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52571466-52576465 Setaria italica
Seita.9G485600 10.0kb upstream 10.0kb upstream 13049 true scaffold_9: 52558417-52571465 Setaria italica
Seita.9G485600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52558417-52568416 Setaria italica
Seita.9G485600 10.0kb downstream 10.0kb downstream 13049 true scaffold_9: 52568417-52581465 Setaria italica
Seita.9G485600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52571466-52581465 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187391 5267 Panicoideae View MSA
124578405 5269 Grass View MSA
122048815 5273 Angiosperm View MSA
121347129 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.323     High  
cufflinks 13.928     High  
cufflinks 18.981     High  
cufflinks 28.832     High  
cufflinks 27.626     High  
cufflinks 12.527        
cufflinks 28.259     High  
cufflinks 32.024     High  
cufflinks 11.908        
cufflinks 68.85     High  
cufflinks 18.826     High  
cufflinks 108.895     High  
cufflinks 99.637     High  
cufflinks 36.129     High  
cufflinks 339.58     High High
cufflinks 24.85     High  
cufflinks 584.167     High High
cufflinks 3.775       Low
cufflinks 47.852     High  
cufflinks 103.742     High  

0 Strain