Gene : Seita.9G496100 S. italica v2.2
Defline:  (1 of 1) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Genomic Order:  4961
Name:  ? Seita.9G496100 Secondary Identifier:  ? PAC:32691542
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G496100 0.5kb upstream 0.5kb upstream 8075 true scaffold_9: 53278192-53286266 Setaria italica
Seita.9G496100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53278192-53278691 Setaria italica
Seita.9G496100 0.5kb downstream 0.5kb downstream 8075 true scaffold_9: 53278692-53286766 Setaria italica
Seita.9G496100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53286267-53286766 Setaria italica
Seita.9G496100 1.0kb upstream 1.0kb upstream 8575 true scaffold_9: 53277692-53286266 Setaria italica
Seita.9G496100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53277692-53278691 Setaria italica
Seita.9G496100 1.0kb downstream 1.0kb downstream 8575 true scaffold_9: 53278692-53287266 Setaria italica
Seita.9G496100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53286267-53287266 Setaria italica
Seita.9G496100 2.0kb upstream 2.0kb upstream 9575 true scaffold_9: 53276692-53286266 Setaria italica
Seita.9G496100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53276692-53278691 Setaria italica
Seita.9G496100 2.0kb downstream 2.0kb downstream 9575 true scaffold_9: 53278692-53288266 Setaria italica
Seita.9G496100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53286267-53288266 Setaria italica
Seita.9G496100 5.0kb upstream 5.0kb upstream 12575 true scaffold_9: 53273692-53286266 Setaria italica
Seita.9G496100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53273692-53278691 Setaria italica
Seita.9G496100 5.0kb downstream 5.0kb downstream 12575 true scaffold_9: 53278692-53291266 Setaria italica
Seita.9G496100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53286267-53291266 Setaria italica
Seita.9G496100 10.0kb upstream 10.0kb upstream 17575 true scaffold_9: 53268692-53286266 Setaria italica
Seita.9G496100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53268692-53278691 Setaria italica
Seita.9G496100 10.0kb downstream 10.0kb downstream 17575 true scaffold_9: 53278692-53296266 Setaria italica
Seita.9G496100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53286267-53296266 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186015 5267 Panicoideae View MSA
124574051 5269 Grass View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.606        
cufflinks 4.516        
cufflinks 5.35        
cufflinks 3.891        
cufflinks 9.598       High
cufflinks 4.402        
cufflinks 10.655       High
cufflinks 13.798     High High
cufflinks 20.467     High High
cufflinks 2.086        
cufflinks 2.89        
cufflinks 1.667       Low
cufflinks 1.443       Low
cufflinks 6.137        
cufflinks 1.758       Low
cufflinks 8.17        
cufflinks 1.784       Low
cufflinks 3.115        
cufflinks 4.678        
cufflinks 1.78       Low

0 Strain