Gene : Seita.9G497700 S. italica v2.2
Defline:  (1 of 5) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Genomic Order:  4977
Name:  ? Seita.9G497700 Secondary Identifier:  ? PAC:32689953
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G497700 0.5kb upstream 0.5kb upstream 3856 true scaffold_9: 53360412-53364267 Setaria italica
Seita.9G497700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53360412-53360911 Setaria italica
Seita.9G497700 0.5kb downstream 0.5kb downstream 3856 true scaffold_9: 53360912-53364767 Setaria italica
Seita.9G497700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53364268-53364767 Setaria italica
Seita.9G497700 1.0kb upstream 1.0kb upstream 4356 true scaffold_9: 53359912-53364267 Setaria italica
Seita.9G497700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53359912-53360911 Setaria italica
Seita.9G497700 1.0kb downstream 1.0kb downstream 4356 true scaffold_9: 53360912-53365267 Setaria italica
Seita.9G497700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53364268-53365267 Setaria italica
Seita.9G497700 2.0kb upstream 2.0kb upstream 5356 true scaffold_9: 53358912-53364267 Setaria italica
Seita.9G497700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53358912-53360911 Setaria italica
Seita.9G497700 2.0kb downstream 2.0kb downstream 5356 true scaffold_9: 53360912-53366267 Setaria italica
Seita.9G497700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53364268-53366267 Setaria italica
Seita.9G497700 5.0kb upstream 5.0kb upstream 8356 true scaffold_9: 53355912-53364267 Setaria italica
Seita.9G497700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53355912-53360911 Setaria italica
Seita.9G497700 5.0kb downstream 5.0kb downstream 8356 true scaffold_9: 53360912-53369267 Setaria italica
Seita.9G497700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53364268-53369267 Setaria italica
Seita.9G497700 10.0kb upstream 10.0kb upstream 13356 true scaffold_9: 53350912-53364267 Setaria italica
Seita.9G497700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53350912-53360911 Setaria italica
Seita.9G497700 10.0kb downstream 10.0kb downstream 13356 true scaffold_9: 53360912-53374267 Setaria italica
Seita.9G497700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53364268-53374267 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180866 5267 Panicoideae View MSA
124574608 5269 Grass View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.717     High High
cufflinks 12.481       Low
cufflinks 12.841     High Low
cufflinks 15.966     High  
cufflinks 20.534     High  
cufflinks 12.853       Low
cufflinks 19.197     High  
cufflinks 7.951       Low
cufflinks 15.491     High  
cufflinks 18.777     High  
cufflinks 22.528     High  
cufflinks 26.58     High High
cufflinks 15.72     High  
cufflinks 21.102     High  
cufflinks 21.78     High  
cufflinks 17.919     High  
cufflinks 17.711     High  
cufflinks 22.213     High  
cufflinks 19.517     High  
cufflinks 19.717     High  

0 Strain