Gene : Seita.9G503900 S. italica v2.2
Defline:  (1 of 4) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  5039
Name:  ? Seita.9G503900 Secondary Identifier:  ? PAC:32689922
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G503900 0.5kb upstream 0.5kb upstream 4490 true scaffold_9: 53774409-53778898 Setaria italica
Seita.9G503900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53778399-53778898 Setaria italica
Seita.9G503900 0.5kb downstream 0.5kb downstream 4490 true scaffold_9: 53773909-53778398 Setaria italica
Seita.9G503900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53773909-53774408 Setaria italica
Seita.9G503900 1.0kb upstream 1.0kb upstream 4990 true scaffold_9: 53774409-53779398 Setaria italica
Seita.9G503900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53778399-53779398 Setaria italica
Seita.9G503900 1.0kb downstream 1.0kb downstream 4990 true scaffold_9: 53773409-53778398 Setaria italica
Seita.9G503900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53773409-53774408 Setaria italica
Seita.9G503900 2.0kb upstream 2.0kb upstream 5990 true scaffold_9: 53774409-53780398 Setaria italica
Seita.9G503900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53778399-53780398 Setaria italica
Seita.9G503900 2.0kb downstream 2.0kb downstream 5990 true scaffold_9: 53772409-53778398 Setaria italica
Seita.9G503900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53772409-53774408 Setaria italica
Seita.9G503900 5.0kb upstream 5.0kb upstream 8990 true scaffold_9: 53774409-53783398 Setaria italica
Seita.9G503900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53778399-53783398 Setaria italica
Seita.9G503900 5.0kb downstream 5.0kb downstream 8990 true scaffold_9: 53769409-53778398 Setaria italica
Seita.9G503900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53769409-53774408 Setaria italica
Seita.9G503900 10.0kb upstream 10.0kb upstream 13990 true scaffold_9: 53774409-53788398 Setaria italica
Seita.9G503900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53778399-53788398 Setaria italica
Seita.9G503900 10.0kb downstream 10.0kb downstream 13990 true scaffold_9: 53764409-53778398 Setaria italica
Seita.9G503900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53764409-53774408 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186401 5267 Panicoideae View MSA
124589180 5269 Grass View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.352     High  
cufflinks 26.035     High High
cufflinks 14.571     High  
cufflinks 10.719       Low
cufflinks 14.553     High  
cufflinks 26.1     High High
cufflinks 16.539     High  
cufflinks 21.685     High  
cufflinks 30.814     High High
cufflinks 14.03        
cufflinks 19.971     High  
cufflinks 19.29     High  
cufflinks 16.693     High  
cufflinks 19.923     High  
cufflinks 24.819     High  
cufflinks 8.434       Low
cufflinks 23.054     High  
cufflinks 8.607       Low
cufflinks 13.836     High  
cufflinks 24.399     High  

0 Strain