Gene : Seita.9G510200 S. italica v2.2
Defline:  (1 of 1) PTHR12459:SF6 - TRANSMEMBRANE PROTEIN Genomic Order:  5102
Name:  ? Seita.9G510200 Secondary Identifier:  ? PAC:32688034
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G510200 0.5kb upstream 0.5kb upstream 4292 true scaffold_9: 54250968-54255259 Setaria italica
Seita.9G510200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 54250968-54251467 Setaria italica
Seita.9G510200 0.5kb downstream 0.5kb downstream 4292 true scaffold_9: 54251468-54255759 Setaria italica
Seita.9G510200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 54255260-54255759 Setaria italica
Seita.9G510200 1.0kb upstream 1.0kb upstream 4792 true scaffold_9: 54250468-54255259 Setaria italica
Seita.9G510200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 54250468-54251467 Setaria italica
Seita.9G510200 1.0kb downstream 1.0kb downstream 4792 true scaffold_9: 54251468-54256259 Setaria italica
Seita.9G510200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 54255260-54256259 Setaria italica
Seita.9G510200 2.0kb upstream 2.0kb upstream 5792 true scaffold_9: 54249468-54255259 Setaria italica
Seita.9G510200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 54249468-54251467 Setaria italica
Seita.9G510200 2.0kb downstream 2.0kb downstream 5792 true scaffold_9: 54251468-54257259 Setaria italica
Seita.9G510200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 54255260-54257259 Setaria italica
Seita.9G510200 5.0kb upstream 5.0kb upstream 8792 true scaffold_9: 54246468-54255259 Setaria italica
Seita.9G510200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 54246468-54251467 Setaria italica
Seita.9G510200 5.0kb downstream 5.0kb downstream 8792 true scaffold_9: 54251468-54260259 Setaria italica
Seita.9G510200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 54255260-54260259 Setaria italica
Seita.9G510200 10.0kb upstream 10.0kb upstream 13792 true scaffold_9: 54241468-54255259 Setaria italica
Seita.9G510200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 54241468-54251467 Setaria italica
Seita.9G510200 10.0kb downstream 10.0kb downstream 13792 true scaffold_9: 54251468-54265259 Setaria italica
Seita.9G510200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 54255260-54265259 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178890 5267 Panicoideae View MSA
124570345 5269 Grass View MSA
122042265 5273 Angiosperm View MSA
121346906 5274 Embryophyte View MSA
123424651 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.924        
cufflinks 3.168       High
cufflinks 0.758       Low
cufflinks 0.793       Low
cufflinks 0.565       Low
cufflinks 2.706       High
cufflinks 2.973       High
cufflinks 1.549        
cufflinks 1.369        
cufflinks 1.414        
cufflinks 1.575        
cufflinks 1.145        
cufflinks 1.295        
cufflinks 0.84       Low
cufflinks 1.53        
cufflinks 2.947       High
cufflinks 1.242        
cufflinks 1.659        
cufflinks 1.251        
cufflinks 1.409        

0 Strain